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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   UBP27   ubiquitin-specific protease 27 
 ath-r.7   UBP27   ubiquitin-specific protease 27 
 ath-m.9   UBP27   ubiquitin-specific protease 27 
 ath-e.2   UBP27   ubiquitin-specific protease 27 
 ath-m.4.bio   UBP27   ubiquitin-specific protease 27 
 ath-m.4.hor   UBP27   ubiquitin-specific protease 27 
 ath-m.4.lig   UBP27   ubiquitin-specific protease 27 
 ath-m.4.str   UBP27   ubiquitin-specific protease 27 
 ath-m.4.tis   UBP27   ubiquitin-specific protease 27 
 gma-u.5   100813815   ubiquitin carboxyl-terminal hydrolase 27 
 gma-u.5   100802492   ubiquitin carboxyl-terminal hydrolase 27 
 vvi-u.5   100266433   ubiquitin carboxyl-terminal hydrolase 27 
 ppo-u.5   7456283   ubiquitin carboxyl-terminal hydrolase 27 
 mtr-u.5   11428939   ubiquitin carboxyl-terminal hydrolase 27 
 sly-u.5   101263107   ubiquitin carboxyl-terminal hydrolase 27 
 osa-u.5   9266560   ubiquitin carboxyl-terminal hydrolase 27 
 zma-u.5   103633186   ubiquitin carboxyl-terminal hydrolase 27 
 zma-u.5   103651463   ubiquitin carboxyl-terminal hydrolase 27 
 zma-u.5   100193497   Ubiquitin carboxyl-terminal hydrolase 

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Top 50 coexpressed genes to UBP27 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UBP27 (ath-u.5 coexpression data)

CoexMap"830092"


athUBP27 | Entrez gene ID : 830092      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 1 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005741 [list] [network] mitochondrial outer membrane  (37 genes)  IDA  
GO:0031966 [list] [network] mitochondrial membrane  (105 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (39 genes)  IDA  
GO:0008233 [list] [network] peptidase activity  (264 genes)  IDA  
Protein NP_001190965.1 [sequence] [blastp]
NP_001320167.1 [sequence] [blastp]
NP_568058.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  nucl 3,  cysk 1,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001190965.1)
nucl 5,  mito 2,  cyto 1,  chlo_mito 1,  mito_plas 1  (predict for NP_001320167.1)
nucl 4,  mito 3,  chlo 1,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_568058.1)
Subcellular
localization
TargetP
mito 7,  other 3  (predict for NP_001190965.1)
mito 7,  other 3  (predict for NP_001320167.1)
mito 7,  other 3  (predict for NP_568058.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
UBP27

.
ath-r.7
for
UBP27

.
ath-m.9
for
UBP27

.
ath-e.2
for
UBP27

.
ath-m.4.bio
for
UBP27

.
ath-m.4.hor
for
UBP27

.
ath-m.4.lig
for
UBP27

.
ath-m.4.str
for
UBP27

.
ath-m.4.tis
for
UBP27

.
gma-u.5
for
100813815

.
gma-u.5
for
100802492

.
vvi-u.5
for
100266433

.
ppo-u.5
for
7456283

.
mtr-u.5
for
11428939

.
sly-u.5
for
101263107

.
osa-u.5
for
9266560

.
zma-u.5
for
103633186

.
zma-u.5
for
103651463

.
zma-u.5
for
100193497

.


Ortholog ID: 9069
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol UBP27 LOC100802492 LOC100813815 LOC101263107 LOC9266560 LOC103633186 LOC103651463 LOC103835125 LOC100266433 LOC7456283 LOC11428939 LOC123053313 LOC123045468 LOC123426725 LOC107919890 LOC107912924 LOC106381983 LOC106361504 LOC8073997 LOC102603427 LOC102608942 LOC100826818 LOC107825716 LOC107765225
Function* ubiquitin-specific protease 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27-like ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27 ubiquitin carboxyl-terminal hydrolase 27-like ubiquitin carboxyl-terminal hydrolase 27
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
gma03083 Polycomb repressive complex 2
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
ghi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00790 Folate biosynthesis 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03083 Polycomb repressive complex 2
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00770 Pantothenate and CoA biosynthesis 2
sot03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830092 100802492 100813815 101263107 9266560 103633186 103651463 103835125 100266433 7456283 11428939 123053313 123045468 123426725 107919890 107912924 106381983 106361504 8073997 102603427 102608942 100826818 107825716 107765225
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