ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	LAC13	laccase 13
ath-r.7	LAC13	laccase 13
ath-m.9	LAC13	laccase 13
ath-e.2	LAC13	laccase 13
ath-m.4.bio	LAC13	laccase 13
ath-m.4.hor	LAC13	laccase 13
ath-m.4.lig	LAC13	laccase 13
ath-m.4.str	LAC13	laccase 13
ath-m.4.tis	LAC13	laccase 13
ath-u.5	LAC3	laccase 3
ath-u.5	LAC5	laccase 5
ath-u.5	LAC12	laccase 12
bra-r.6	103867971	laccase-3
bra-r.6	103866955	laccase-5
bra-r.6	103865022	laccase-3
bna-r.1	125575709	laccase-3-like
bna-r.1	125585382	laccase-3-like
bna-r.1	106454895	laccase-3
ghi-r.1	107927043	laccase-13
ghi-r.1	107900546	laccase-5
ghi-r.1	107900545	laccase-5
cit-r.1	102609228	laccase-12-like
cit-r.1	102622903	laccase-13-like
cit-r.1	102616340	laccase-13
gma-u.5	547704	diphenol oxidase laccase
gma-u.5	100786719	laccase-3
gma-u.5	100796956	laccase-5
vvi-u.5	100262045	laccase-12
ppo-u.5	7462101	laccase-12
ppo-u.5	7462100	laccase-12
ppo-u.5	7464613	laccase-12
mtr-u.5	11410085	laccase-3
mtr-u.5	11411380	laccase-12
mtr-u.5	11434534	laccase-5
sly-u.5	101262425	laccase-5-like
sly-u.5	101251392	laccase-3-like
sot-r.1	102578240	laccase-12-like
sot-r.1	102583432	laccase-12-like
nta-r.1	107762767	laccase-12-like
nta-r.1	107832821	laccase-3-like
osa-u.5	4349566	putative laccase-17
osa-u.5	4351276	laccase-23-like
osa-u.5	4327522	laccase-3-like
zma-u.5	100282094	L-ascorbate oxidase
zma-u.5	100502492	putative laccase family protein
zma-u.5	103654275	laccase-23
tae-r.2	123079615	laccase-3
tae-r.2	123120487	putative laccase-17
tae-r.2	123111393	putative laccase-17
hvu-r.1	123397646	putative laccase-17
hvu-r.1	123440584	laccase-3
sbi-r.1	8085414	laccase-3
bdi-r.1	100845885	laccase-3
bdi-r.1	100835168	laccase-23

Top 50 coexpressed genes to LAC13 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to LAC13 (ath-u.5 coexpression data)

CoexMap"830604"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0048226 [list] [network] Casparian strip	(16 genes)	IDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM

GO MF

Protein

NP_001330376.1 [sequence] [blastp]
NP_001330377.1 [sequence] [blastp]
NP_196330.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 1, mito 1, plas 1, pero 1, chlo_mito 1, mito_plas 1	(predict for NP_001330376.1)
nucl 4, chlo 1, mito 1, plas 1, pero 1, chlo_mito 1, mito_plas 1	(predict for NP_001330377.1)
vacu 4, E.R. 4, E.R._vacu 4	(predict for NP_196330.3)

Subcellular
localization
TargetP

other 8	(predict for NP_001330376.1)
other 8	(predict for NP_001330377.1)
scret 9	(predict for NP_196330.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for LAC13	ath-r.7 for LAC13	ath-m.9 for LAC13	ath-e.2 for LAC13	ath-m.4.bio for LAC13	ath-m.4.hor for LAC13	ath-m.4.lig for LAC13	ath-m.4.str for LAC13	ath-m.4.tis for LAC13	ath-u.5 for LAC3	ath-u.5 for LAC5	ath-u.5 for LAC12	bra-r.6 for 103867971	bra-r.6 for 103866955	bra-r.6 for 103865022	bna-r.1 for 125575709	bna-r.1 for 125585382	bna-r.1 for 106454895	ghi-r.1 for 107927043	ghi-r.1 for 107900546	ghi-r.1 for 107900545	cit-r.1 for 102609228	cit-r.1 for 102622903	cit-r.1 for 102616340	gma-u.5 for 547704	gma-u.5 for 100786719	gma-u.5 for 100796956	vvi-u.5 for 100262045	ppo-u.5 for 7462101	ppo-u.5 for 7462100	ppo-u.5 for 7464613	mtr-u.5 for 11410085	mtr-u.5 for 11411380	mtr-u.5 for 11434534	sly-u.5 for 101262425	sly-u.5 for 101251392	sot-r.1 for 102578240	sot-r.1 for 102583432	nta-r.1 for 107762767	nta-r.1 for 107832821	osa-u.5 for 4349566	osa-u.5 for 4351276	osa-u.5 for 4327522	zma-u.5 for 100282094	zma-u.5 for 100502492	zma-u.5 for 103654275	tae-r.2 for 123079615	tae-r.2 for 123120487	tae-r.2 for 123111393	hvu-r.1 for 123397646	hvu-r.1 for 123440584	sbi-r.1 for 8085414	bdi-r.1 for 100845885	bdi-r.1 for 100835168

Ortholog

Ortholog ID: 825

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LAC13

LAC3

LAC5

Function^*

laccase 13

laccase 3

laccase 5

laccase-3

laccase-5

laccase-12

laccase-12-like

laccase-12

laccase-13

laccase-5

laccase-12-like

laccase-13-like

laccase-13

laccase-3

laccase-5

laccase-3

laccase-12

laccase-3

laccase-12

laccase-5

laccase-5-like

laccase-3-like

laccase-12

laccase-12-like

laccase-3

laccase-3-like

laccase-12-like

laccase-3-like

laccase-12

putative laccase-17

laccase-23-like

laccase-3-like

L-ascorbate oxidase

putative laccase family protein

laccase-23

laccase-3

putative laccase-17

laccase-3

putative laccase-17

laccase-3

laccase-23

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	4
ath04981	Folate transport and metabolism	4
ath00561	Glycerolipid metabolism	2
ath00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00073	Cutin, suberine and wax biosynthesis	4
ath04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00460	Cyanoamino acid metabolism	2
bra00500	Starch and sucrose metabolism	2
bra00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00073	Cutin, suberine and wax biosynthesis	4
bra00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00600	Sphingolipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00360	Phenylalanine metabolism	2
ghi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	4
gma02010	ABC transporters	2
gma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2
ppo00564	Glycerophospholipid metabolism	2
ppo02010	ABC transporters	2
ppo04981	Folate transport and metabolism	2
ppo04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2
sly00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00360	Phenylalanine metabolism	2
sly00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2
sot00941	Flavonoid biosynthesis	2
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2
sot00073	Cutin, suberine and wax biosynthesis	2
sot04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot00071	Fatty acid degradation	2
sot00073	Cutin, suberine and wax biosynthesis	2
sot02010	ABC transporters	2
sot04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	3
nta00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	3
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	3
tae04981	Folate transport and metabolism	3
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3
tae00053	Ascorbate and aldarate metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00073	Cutin, suberine and wax biosynthesis	3
tae02010	ABC transporters	3
tae04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2
sbi00073	Cutin, suberine and wax biosynthesis	2
sbi02010	ABC transporters	2
sbi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	2
bdi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

830604

817571

818630

103867971

103866955

103850581

106419221

106444570

106446093

107927043

107962127

107962128

102609228

102622903

102616340

100786719

100796956

100785427

100262045

7464613

7464614

7497422

11410085

11411380

11434534

101262425

101251392

101262618

102578240

102590317

102597748

107783942

107812162

107823893

4349566

4351276

4327522

100282094

100502492

103654275

123079615

123120487

123071258

123397646

123440584

8085414

100845885

100835168

The preparation time of this page was 1.5 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	3	3	1	3	3	2	2	2	3	3	3	2	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to LAC13 (ath-u.5 coexpression data)

Top 50 enrichment test to LAC13 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**