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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   RARE1   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100806216   pentatricopeptide repeat-containing protein At5g13270, chloroplastic 
 gma-u.5   100807173   pentatricopeptide repeat-containing protein At5g13270, chloroplastic 
 vvi-u.5   100260840   pentatricopeptide repeat-containing protein At5g13270, chloroplastic 
 ppo-u.5   18094493   pentatricopeptide repeat-containing protein At5g13270, chloroplastic 

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Top 50 coexpressed genes to RARE1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RARE1 (ath-u.5 coexpression data)

CoexMap"831168"


athRARE1 | Entrez gene ID : 831168      
Species ath gma vvi ppo hvu mtr osa sot tae nta bra cit ghi zma bna bdi sly sbi cre
Paralog 9 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (230 genes)  IDA IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0004126 [list] [network] cytidine deaminase activity  (2 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_196831.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for NP_196831.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_196831.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RARE1

.
ath-r.7
for
RARE1

.
ath-m.9
for
RARE1

.
ath-e.2
for
RARE1

.
ath-m.4.bio
for
RARE1

.
ath-m.4.hor
for
RARE1

.
ath-m.4.lig
for
RARE1

.
ath-m.4.str
for
RARE1

.
ath-m.4.tis
for
RARE1

.
gma-u.5
for
100806216

.
gma-u.5
for
100807173

.
vvi-u.5
for
100260840

.
ppo-u.5
for
18094493

.


Ortholog ID: 15224
Species ath gma gma bra vvi ppo ghi ghi bna bna
Symbol RARE1 LOC100807173 LOC100806216 LOC103846587 LOC100260840 LOC18094493 LOC121213696 LOC107928792 LOC106372305 LOC111201492
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g13270, chloroplastic pentatricopeptide repeat-containing protein At5g13270, chloroplastic pentatricopeptide repeat-containing protein At5g13270, chloroplastic pentatricopeptide repeat-containing protein At5g13270, chloroplastic pentatricopeptide repeat-containing protein At5g13270, chloroplastic pentatricopeptide repeat-containing protein At5g13270, chloroplastic pentatricopeptide repeat-containing protein At5g13270, chloroplastic pentatricopeptide repeat-containing protein At5g13270, chloroplastic pentatricopeptide repeat-containing protein At5g13270, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831168 100807173 100806216 103846587 100260840 18094493 121213696 107928792 106372305 111201492
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