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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT5G55550   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT4G26650   RNA-binding (RRM/RBD/RNP motifs) family protein 

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Top 50 coexpressed genes to AT5G55550 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G55550 (ath-u.5 coexpression data)

CoexMap"835649"


athAT5G55550 | Entrez gene ID : 835649      
Species ath tae mtr osa zma bdi vvi sbi ppo bna sly nta cre sot hvu ghi gma cit bra
Paralog 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001190546.1 [sequence] [blastp]
NP_001331842.1 [sequence] [blastp]
NP_001331843.1 [sequence] [blastp]
NP_001331844.1 [sequence] [blastp]
NP_001331845.1 [sequence] [blastp]
NP_001331846.1 [sequence] [blastp]
NP_001331847.1 [sequence] [blastp]
NP_001331848.1 [sequence] [blastp]
NP_568826.1 [sequence] [blastp]
NP_851195.1 [sequence] [blastp]
NP_974937.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001190546.1)
nucl 10  (predict for NP_001331842.1)
nucl 10  (predict for NP_001331843.1)
nucl 10  (predict for NP_001331844.1)
nucl 10  (predict for NP_001331845.1)
nucl 10  (predict for NP_001331846.1)
nucl 10  (predict for NP_001331847.1)
nucl 10  (predict for NP_001331848.1)
nucl 10  (predict for NP_568826.1)
nucl 10  (predict for NP_851195.1)
nucl 10  (predict for NP_974937.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190546.1)
other 9  (predict for NP_001331842.1)
other 9  (predict for NP_001331843.1)
other 9  (predict for NP_001331844.1)
other 9  (predict for NP_001331845.1)
other 9  (predict for NP_001331846.1)
other 9  (predict for NP_001331847.1)
other 9  (predict for NP_001331848.1)
other 9  (predict for NP_568826.1)
other 9  (predict for NP_851195.1)
other 9  (predict for NP_974937.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G55550

.
ath-r.7
for
AT5G55550

.
ath-m.9
for
AT5G55550

.
ath-e.2
for
AT5G55550

.
ath-m.4.bio
for
AT5G55550

.
ath-m.4.hor
for
AT5G55550

.
ath-m.4.lig
for
AT5G55550

.
ath-m.4.str
for
AT5G55550

.
ath-m.4.tis
for
AT5G55550

.
ath-u.5
for
AT4G26650

.


Ortholog ID: 16811
Species ath ath bra bra bna bna
Symbol AT5G55550 AT4G26650 LOC103866428 LOC103856982 LOC106345985 LOC111204368
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00230 Purine metabolism 2
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 4
bra04517 IgSF CAM signaling 4
bra04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra00051 Fructose and mannose metabolism 2
bra00510 N-Glycan biosynthesis 2
bra00513 Various types of N-glycan biosynthesis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835649 828772 103866428 103856982 106345985 111204368
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