ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-r.7	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-m.9	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-e.2	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-m.4.bio	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-m.4.hor	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-m.4.lig	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-m.4.str	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-m.4.tis	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT3G20890	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100819738	heterogeneous nuclear ribonucleoprotein H3
gma-u.5	100816391	heterogeneous nuclear ribonucleoprotein H3
gma-u.5	100805177	G-rich sequence factor 1-like
vvi-u.5	100251936	uncharacterized LOC100251936
vvi-u.5	100247294	uncharacterized LOC100247294
ppo-u.5	7480460	uncharacterized LOC7480460
ppo-u.5	7480048	uncharacterized LOC7480048
ppo-u.5	7482324	uncharacterized LOC7482324
mtr-u.5	11439103	G-rich sequence factor 1
mtr-u.5	11443549	heterogeneous nuclear ribonucleoprotein H3
sly-u.5	101249521	uncharacterized LOC101249521
sly-u.5	101264406	uncharacterized LOC101264406
sly-u.5	101252375	uncharacterized LOC101252375
osa-u.5	4349693	uncharacterized LOC4349693
osa-u.5	4351412	uncharacterized LOC4351412
zma-u.5	100282455	uncharacterized LOC100282455
zma-u.5	100193205	uncharacterized LOC100193205
zma-u.5	100282450	RNA binding protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001190629.1 [sequence] [blastp]
NP_201402.3 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, nucl 2, mito 2, chlo 1, nucl_plas 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1	(predict for NP_001190629.1)
chlo 9	(predict for NP_201402.3)

Subcellular
localization
TargetP

mito 7, other 6	(predict for NP_001190629.1)
mito 7, other 4	(predict for NP_201402.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G66010	ath-r.7 for AT5G66010	ath-m.9 for AT5G66010	ath-e.2 for AT5G66010	ath-m.4.bio for AT5G66010	ath-m.4.hor for AT5G66010	ath-m.4.lig for AT5G66010	ath-m.4.str for AT5G66010	ath-m.4.tis for AT5G66010	ath-u.5 for AT3G20890	gma-u.5 for 100819738	gma-u.5 for 100816391	gma-u.5 for 100805177	vvi-u.5 for 100251936	vvi-u.5 for 100247294	ppo-u.5 for 7480460	ppo-u.5 for 7480048	ppo-u.5 for 7482324	mtr-u.5 for 11439103	mtr-u.5 for 11443549	sly-u.5 for 101249521	sly-u.5 for 101264406	sly-u.5 for 101252375	osa-u.5 for 4349693	osa-u.5 for 4351412	zma-u.5 for 100282455	zma-u.5 for 100193205	zma-u.5 for 100282450

Ortholog

Ortholog ID: 3228

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA-binding (RRM/RBD/RNP motifs) family protein

heterogeneous nuclear ribonucleoprotein H3

heterogeneous nuclear ribonucleoprotein H2-like

heterogeneous nuclear ribonucleoprotein H3-like

heterogeneous nuclear ribonucleoprotein F

uncharacterized LOC102628397

uncharacterized LOC102629250

heterogeneous nuclear ribonucleoprotein H3

uncharacterized LOC100251936

uncharacterized LOC100247294

uncharacterized LOC7480460

uncharacterized LOC7482324

heterogeneous nuclear ribonucleoprotein H3

G-rich sequence factor 1

uncharacterized LOC101264406

uncharacterized LOC101252375

heterogeneous nuclear ribonucleoprotein H2-like

heterogeneous nuclear ribonucleoprotein H2

uncharacterized LOC107800593

uncharacterized LOC107812664

uncharacterized LOC4351412

uncharacterized LOC4349693

RNA binding protein

uncharacterized LOC100282455

heterogeneous nuclear ribonucleoprotein H3

G-rich sequence factor 1

G-rich sequence factor 1-like

heterogeneous nuclear ribonucleoprotein F

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03420	Nucleotide excision repair	2
bra03040	Spliceosome	2
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00592	alpha-Linolenic acid metabolism	2
vvi04146	Peroxisome	2
vvi00790	Folate biosynthesis	2
vvi01240	Biosynthesis of cofactors	2
vvi04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo04120	Ubiquitin mediated proteolysis	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03082	ATP-dependent chromatin remodeling	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8
sly03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03015	mRNA surveillance pathway	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03040	Spliceosome	4
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00280	Valine, leucine and isoleucine degradation	6
tae03010	Ribosome	5
tae04141	Protein processing in endoplasmic reticulum	3
tae00640	Propanoate metabolism	3
tae00785	Lipoic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	7

Expression

Expression pattern

Entrez Gene ID^*

836731

821638

103869220

103859876

125603090

111205396

107925925

107940528

102628397

102629250

100816391

100819738

100251936

100247294

7480460

7482324

11443549

11439103

101264406

101252375

102591282

102604361

107800593

107812664

4351412

4349693

100282450

100282455

123131720

123135568

123401413

110430182

100845704

5726664

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT5G66010 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G66010 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	10	3	2	3	2	3	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G66010 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G66010 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**