ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102591282	heterogeneous nuclear ribonucleoprotein H2-like
sot-r.1	102599764	heterogeneous nuclear ribonucleoprotein F
sot-r.1	102604361	heterogeneous nuclear ribonucleoprotein H2
sly-u.5	101252375	uncharacterized LOC101252375
sly-u.5	101264406	uncharacterized LOC101264406
sly-u.5	101249521	uncharacterized LOC101249521
nta-r.1	107800593	uncharacterized LOC107800593
nta-r.1	107762413	uncharacterized LOC107762413
nta-r.1	107781187	uncharacterized LOC107781187
ath-u.5	AT3G20890	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100786072	heterogeneous nuclear ribonucleoprotein F
gma-u.5	100805177	G-rich sequence factor 1-like
gma-u.5	100816391	heterogeneous nuclear ribonucleoprotein H3
bra-r.6	103837661	heterogeneous nuclear ribonucleoprotein H2
bra-r.6	103869220	heterogeneous nuclear ribonucleoprotein H3
bra-r.6	103859876	heterogeneous nuclear ribonucleoprotein H3
vvi-u.5	100247294	uncharacterized LOC100247294
vvi-u.5	100251936	uncharacterized LOC100251936
ppo-u.5	7480460	uncharacterized LOC7480460
ppo-u.5	7480048	uncharacterized LOC7480048
ppo-u.5	7482324	uncharacterized LOC7482324
mtr-u.5	11439103	G-rich sequence factor 1
mtr-u.5	11443549	heterogeneous nuclear ribonucleoprotein H3
ghi-r.1	107889333	heterogeneous nuclear ribonucleoprotein F
ghi-r.1	107925925	heterogeneous nuclear ribonucleoprotein F
ghi-r.1	107940528	heterogeneous nuclear ribonucleoprotein F
bna-r.1	106397035	heterogeneous nuclear ribonucleoprotein F
bna-r.1	106392228	heterogeneous nuclear ribonucleoprotein F-like
bna-r.1	106389353	heterogeneous nuclear ribonucleoprotein H3
cit-r.1	102629250	uncharacterized LOC102629250
cit-r.1	102628397	uncharacterized LOC102628397
osa-u.5	4351412	uncharacterized LOC4351412
osa-u.5	4349693	uncharacterized LOC4349693
zma-u.5	100193205	uncharacterized LOC100193205
zma-u.5	103636375	G-rich sequence factor 1
zma-u.5	100282455	uncharacterized LOC100282455
tae-r.2	123131720	heterogeneous nuclear ribonucleoprotein H3
tae-r.2	123135568	G-rich sequence factor 1
tae-r.2	123143141	G-rich sequence factor 1
hvu-r.1	123401413	G-rich sequence factor 1
sbi-r.1	110430182	G-rich sequence factor 1-like
bdi-r.1	100845704	heterogeneous nuclear ribonucleoprotein F
cre-r.1	CHLRE_17g741850v5	uncharacterized protein

Top 50 coexpressed genes to 102591282 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102591282 (sot-r.1 coexpression data)

CoexMap"102591282"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1335 genes)

IEA

Protein

XP_006340003.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1

(predict for XP_006340003.1)

Subcellular
localization
TargetP

other 6, mito 3

(predict for XP_006340003.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102591282	sot-r.1 for 102599764	sot-r.1 for 102604361	sly-u.5 for 101252375	sly-u.5 for 101264406	sly-u.5 for 101249521	nta-r.1 for 107800593	nta-r.1 for 107762413	nta-r.1 for 107781187	ath-u.5 for AT3G20890	ath-u.5 for AT5G66010	gma-u.5 for 100786072	gma-u.5 for 100805177	gma-u.5 for 100816391	bra-r.6 for 103837661	bra-r.6 for 103869220	bra-r.6 for 103859876	vvi-u.5 for 100247294	vvi-u.5 for 100251936	ppo-u.5 for 7480460	ppo-u.5 for 7480048	ppo-u.5 for 7482324	mtr-u.5 for 11439103	mtr-u.5 for 11443549	ghi-r.1 for 107889333	ghi-r.1 for 107925925	ghi-r.1 for 107940528	bna-r.1 for 106397035	bna-r.1 for 106392228	bna-r.1 for 106389353	cit-r.1 for 102629250	cit-r.1 for 102628397	osa-u.5 for 4351412	osa-u.5 for 4349693	zma-u.5 for 100193205	zma-u.5 for 103636375	zma-u.5 for 100282455	tae-r.2 for 123131720	tae-r.2 for 123135568	tae-r.2 for 123143141	hvu-r.1 for 123401413	sbi-r.1 for 110430182	bdi-r.1 for 100845704	cre-r.1 for CHLRE_17g741850v5

Ortholog

Ortholog ID: 3228

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

heterogeneous nuclear ribonucleoprotein H2-like

heterogeneous nuclear ribonucleoprotein F

heterogeneous nuclear ribonucleoprotein H2

uncharacterized LOC101252375

uncharacterized LOC101264406

uncharacterized LOC101249521

uncharacterized LOC107800593

uncharacterized LOC107781187

uncharacterized LOC107812664

RNA-binding (RRM/RBD/RNP motifs) family protein

G-rich sequence factor 1-like

heterogeneous nuclear ribonucleoprotein H3

heterogeneous nuclear ribonucleoprotein H2

heterogeneous nuclear ribonucleoprotein H3

uncharacterized LOC100247294

uncharacterized LOC100251936

uncharacterized LOC7480460

uncharacterized LOC7480048

uncharacterized LOC7482324

G-rich sequence factor 1

heterogeneous nuclear ribonucleoprotein H3

heterogeneous nuclear ribonucleoprotein F

heterogeneous nuclear ribonucleoprotein H3

heterogeneous nuclear ribonucleoprotein H3-like

heterogeneous nuclear ribonucleoprotein H2-like

uncharacterized LOC102629250

uncharacterized LOC102628397

uncharacterized LOC4351412

uncharacterized LOC4349693

G-rich sequence factor 1

uncharacterized LOC100282455

RNA binding protein

heterogeneous nuclear ribonucleoprotein H3

G-rich sequence factor 1

G-rich sequence factor 1-like

heterogeneous nuclear ribonucleoprotein F

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8
sly03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03420	Nucleotide excision repair	2
bra03040	Spliceosome	2
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00592	alpha-Linolenic acid metabolism	2
vvi04146	Peroxisome	2
vvi00790	Folate biosynthesis	2
vvi01240	Biosynthesis of cofactors	2
vvi04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo04120	Ubiquitin mediated proteolysis	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03082	ATP-dependent chromatin remodeling	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	3
ghi04122	Sulfur relay system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03040	Spliceosome	4
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03015	mRNA surveillance pathway	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00280	Valine, leucine and isoleucine degradation	6
tae03010	Ribosome	5
tae04141	Protein processing in endoplasmic reticulum	3
tae00640	Propanoate metabolism	3
tae00785	Lipoic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	7

Expression

Expression pattern

Entrez Gene ID^*

102591282

102599764

102604361

101252375

101264406

101249521

107800593

107781187

107812664

821638

836731

100805177

100816391

100819738

103837661

103869220

103859876

100247294

100251936

7480460

7480048

7482324

11439103

11443549

107889333

107925925

107940528

106389353

111205396

125603090

102629250

102628397

4351412

4349693

103636375

100282455

100282450

123131720

123135568

123143141

123401413

110430182

100845704

5726664

The preparation time of this page was 0.3 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	2	3	3	2	3	2	3	3	2	2	3	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102591282 (sot-r.1 coexpression data)

Top 50 enrichment test to 102591282 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**