ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107889333	heterogeneous nuclear ribonucleoprotein F
ghi-r.1	107925925	heterogeneous nuclear ribonucleoprotein F
ghi-r.1	107940528	heterogeneous nuclear ribonucleoprotein F
ghi-r.1	107891403	heterogeneous nuclear ribonucleoprotein F
ath-u.5	AT3G20890	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G66010	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103859876	heterogeneous nuclear ribonucleoprotein H3
bra-r.6	103869220	heterogeneous nuclear ribonucleoprotein H3
bra-r.6	103837661	heterogeneous nuclear ribonucleoprotein H2
bna-r.1	106366324	heterogeneous nuclear ribonucleoprotein H2-like
bna-r.1	106392228	heterogeneous nuclear ribonucleoprotein F-like
bna-r.1	106397035	heterogeneous nuclear ribonucleoprotein F
cit-r.1	102629250	uncharacterized LOC102629250
cit-r.1	102628397	uncharacterized LOC102628397
gma-u.5	100819738	heterogeneous nuclear ribonucleoprotein H3
gma-u.5	100816391	heterogeneous nuclear ribonucleoprotein H3
gma-u.5	100805177	G-rich sequence factor 1-like
vvi-u.5	100251936	uncharacterized LOC100251936
vvi-u.5	100247294	uncharacterized LOC100247294
ppo-u.5	7480048	uncharacterized LOC7480048
ppo-u.5	7480460	uncharacterized LOC7480460
ppo-u.5	7482324	uncharacterized LOC7482324
mtr-u.5	11443549	heterogeneous nuclear ribonucleoprotein H3
mtr-u.5	11439103	G-rich sequence factor 1
sly-u.5	101264406	uncharacterized LOC101264406
sly-u.5	101252375	uncharacterized LOC101252375
sly-u.5	101249521	uncharacterized LOC101249521
sot-r.1	102591282	heterogeneous nuclear ribonucleoprotein H2-like
sot-r.1	102599764	heterogeneous nuclear ribonucleoprotein F
sot-r.1	102604361	heterogeneous nuclear ribonucleoprotein H2
nta-r.1	107812664	uncharacterized LOC107812664
nta-r.1	107762413	uncharacterized LOC107762413
nta-r.1	107781187	uncharacterized LOC107781187
osa-u.5	4349693	uncharacterized LOC4349693
osa-u.5	4351412	uncharacterized LOC4351412
zma-u.5	100193205	uncharacterized LOC100193205
zma-u.5	100282450	RNA binding protein
zma-u.5	100282455	uncharacterized LOC100282455
tae-r.2	123131720	heterogeneous nuclear ribonucleoprotein H3
tae-r.2	123135568	G-rich sequence factor 1
tae-r.2	123143141	G-rich sequence factor 1
hvu-r.1	123401413	G-rich sequence factor 1
sbi-r.1	110430182	G-rich sequence factor 1-like
bdi-r.1	100845704	heterogeneous nuclear ribonucleoprotein F
cre-r.1	CHLRE_17g741850v5	uncharacterized protein

Top 50 coexpressed genes to 107889333 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107889333 (ghi-r.1 coexpression data)

CoexMap"107889333"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:1990904 [list] [network] ribonucleoprotein complex

(1534 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(3053 genes)

IEA

Protein

XP_016669198.1 [sequence] [blastp]
XP_016669199.1 [sequence] [blastp]
XP_040932474.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 2, mito 2	(predict for XP_016669198.1)
nucl 6, mito 2, cyto 1, mito_plas 1	(predict for XP_016669199.1)
E.R._plas 2, plas 1, E.R. 1, chlo 1, cyto 1, mito 1, vacu 1, chlo_mito 1	(predict for XP_040932474.1)

Subcellular
localization
TargetP

other 8	(predict for XP_016669198.1)
other 8	(predict for XP_016669199.1)
scret 9	(predict for XP_040932474.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107889333	ghi-r.1 for 107925925	ghi-r.1 for 107940528	ghi-r.1 for 107891403	ath-u.5 for AT3G20890	ath-u.5 for AT5G66010	bra-r.6 for 103859876	bra-r.6 for 103869220	bra-r.6 for 103837661	bna-r.1 for 106366324	bna-r.1 for 106392228	bna-r.1 for 106397035	cit-r.1 for 102629250	cit-r.1 for 102628397	gma-u.5 for 100819738	gma-u.5 for 100816391	gma-u.5 for 100805177	vvi-u.5 for 100251936	vvi-u.5 for 100247294	ppo-u.5 for 7480048	ppo-u.5 for 7480460	ppo-u.5 for 7482324	mtr-u.5 for 11443549	mtr-u.5 for 11439103	sly-u.5 for 101264406	sly-u.5 for 101252375	sly-u.5 for 101249521	sot-r.1 for 102591282	sot-r.1 for 102599764	sot-r.1 for 102604361	nta-r.1 for 107812664	nta-r.1 for 107762413	nta-r.1 for 107781187	osa-u.5 for 4349693	osa-u.5 for 4351412	zma-u.5 for 100193205	zma-u.5 for 100282450	zma-u.5 for 100282455	tae-r.2 for 123131720	tae-r.2 for 123135568	tae-r.2 for 123143141	hvu-r.1 for 123401413	sbi-r.1 for 110430182	bdi-r.1 for 100845704	cre-r.1 for CHLRE_17g741850v5

Ortholog

Ortholog ID: 3228

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

heterogeneous nuclear ribonucleoprotein F

RNA-binding (RRM/RBD/RNP motifs) family protein

heterogeneous nuclear ribonucleoprotein H3

heterogeneous nuclear ribonucleoprotein H2

heterogeneous nuclear ribonucleoprotein H3-like

heterogeneous nuclear ribonucleoprotein H2-like

heterogeneous nuclear ribonucleoprotein H3

uncharacterized LOC102629250

uncharacterized LOC102628397

heterogeneous nuclear ribonucleoprotein H3

G-rich sequence factor 1-like

uncharacterized LOC100251936

uncharacterized LOC100247294

uncharacterized LOC7480048

uncharacterized LOC7480460

uncharacterized LOC7482324

heterogeneous nuclear ribonucleoprotein H3

G-rich sequence factor 1

uncharacterized LOC101264406

uncharacterized LOC101252375

uncharacterized LOC101249521

heterogeneous nuclear ribonucleoprotein H2-like

heterogeneous nuclear ribonucleoprotein F

heterogeneous nuclear ribonucleoprotein H2

uncharacterized LOC107812664

uncharacterized LOC107781187

uncharacterized LOC107800593

uncharacterized LOC4349693

uncharacterized LOC4351412

RNA binding protein

uncharacterized LOC100282455

G-rich sequence factor 1

heterogeneous nuclear ribonucleoprotein H3

G-rich sequence factor 1

G-rich sequence factor 1-like

heterogeneous nuclear ribonucleoprotein F

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	3
ghi04122	Sulfur relay system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03420	Nucleotide excision repair	2
bra03040	Spliceosome	2
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00592	alpha-Linolenic acid metabolism	2
vvi04146	Peroxisome	2
vvi00790	Folate biosynthesis	2
vvi01240	Biosynthesis of cofactors	2
vvi04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo04120	Ubiquitin mediated proteolysis	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03082	ATP-dependent chromatin remodeling	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8
sly03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03015	mRNA surveillance pathway	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03040	Spliceosome	4
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00280	Valine, leucine and isoleucine degradation	6
tae03010	Ribosome	5
tae04141	Protein processing in endoplasmic reticulum	3
tae00640	Propanoate metabolism	3
tae00785	Lipoic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	7

Expression

Expression pattern

Entrez Gene ID^*

107889333

107925925

107940528

821638

836731

103859876

103869220

103837661

111205396

125603090

106389353

102629250

102628397

100819738

100816391

100805177

100251936

100247294

7480048

7480460

7482324

11443549

11439103

101264406

101252375

101249521

102591282

102599764

102604361

107812664

107781187

107800593

4349693

4351412

100282450

100282455

103636375

123131720

123135568

123143141

123401413

110430182

100845704

5726664

The preparation time of this page was 0.3 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	2	3	2	3	2	3	3	3	2	3	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107889333 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107889333 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**