ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT1G08360	Ribosomal protein L1p/L10e family
ath-r.7	AT1G08360	Ribosomal protein L1p/L10e family
ath-m.9	AT1G08360	Ribosomal protein L1p/L10e family
ath-e.2	AT1G08360	Ribosomal protein L1p/L10e family
ath-m.4.bio	AT1G08360	Ribosomal protein L1p/L10e family
ath-m.4.hor	AT1G08360	Ribosomal protein L1p/L10e family
ath-m.4.lig	AT1G08360	Ribosomal protein L1p/L10e family
ath-m.4.str	AT1G08360	Ribosomal protein L1p/L10e family
ath-m.4.tis	AT1G08360	Ribosomal protein L1p/L10e family
ath-u.5	PGY1	Ribosomal protein L1p/L10e family
ath-u.5	AT5G22440	Ribosomal protein L1p/L10e family
gma-u.5	100499715	uncharacterized LOC100499715
gma-u.5	100808580	60S ribosomal protein L10a
gma-u.5	100527763	uncharacterized LOC100527763
vvi-u.5	100266487	large ribosomal subunit protein uL1z
vvi-u.5	100263858	large ribosomal subunit protein uL1
ppo-u.5	18098120	60S ribosomal protein L10a-2
ppo-u.5	18098119	60S ribosomal protein L10a-2
ppo-u.5	7473116	60S ribosomal protein L10a-2
mtr-u.5	11406763	60S ribosomal protein L10a-1
mtr-u.5	11428420	60S ribosomal protein L10a-1
mtr-u.5	11412225	60S ribosomal protein L10a-1
sly-u.5	101245686	large ribosomal subunit protein uL1z
sly-u.5	101252594	large ribosomal subunit protein uL1z
sly-u.5	101258620	large ribosomal subunit protein uL1z
osa-u.5	9268245	large ribosomal subunit protein uL1-like
osa-u.5	9266191	60S ribosomal protein L10a
osa-u.5	4325065	large ribosomal subunit protein uL1-like
zma-u.5	100272335	60S ribosomal protein L10a-1
zma-u.5	100502186	ribosomal protein
zma-u.5	100192963	ribosomal protein

Top 50 coexpressed genes to AT1G08360 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G08360 (ath-u.5 coexpression data)

CoexMap"837356"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03010 [list] [network] Ribosome (394 genes)

GO BP

GO:0006412 [list] [network] translation

(926 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(124 genes)	HDA
GO:0022626 [list] [network] cytosolic ribosome	(295 genes)	HDA
GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

Protein

NP_563813.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2

(predict for NP_563813.2)

Subcellular
localization
TargetP

other 7, chlo 3

(predict for NP_563813.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT1G08360	ath-r.7 for AT1G08360	ath-m.9 for AT1G08360	ath-e.2 for AT1G08360	ath-m.4.bio for AT1G08360	ath-m.4.hor for AT1G08360	ath-m.4.lig for AT1G08360	ath-m.4.str for AT1G08360	ath-m.4.tis for AT1G08360	ath-u.5 for PGY1	ath-u.5 for AT5G22440	gma-u.5 for 100499715	gma-u.5 for 100808580	gma-u.5 for 100527763	vvi-u.5 for 100266487	vvi-u.5 for 100263858	ppo-u.5 for 18098120	ppo-u.5 for 18098119	ppo-u.5 for 7473116	mtr-u.5 for 11406763	mtr-u.5 for 11428420	mtr-u.5 for 11412225	sly-u.5 for 101245686	sly-u.5 for 101252594	sly-u.5 for 101258620	osa-u.5 for 9268245	osa-u.5 for 9266191	osa-u.5 for 4325065	zma-u.5 for 100272335	zma-u.5 for 100502186	zma-u.5 for 100192963

Ortholog

Ortholog ID: 1415

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PGY1

Function^*

Ribosomal protein L1p/L10e family

60S ribosomal protein L10a-1

60S ribosomal protein L10a-3

60S ribosomal protein L10a-2

60S ribosomal protein L10a-3-like

60S ribosomal protein L10a-1

60S ribosomal protein L10a

60S ribosomal protein L10a-3

uncharacterized LOC100499715

60S ribosomal protein L10a

large ribosomal subunit protein uL1

large ribosomal subunit protein uL1z

60S ribosomal protein L10a-2

60S ribosomal protein L10a-1

large ribosomal subunit protein uL1z

60S ribosomal protein L10a-1-like

60S ribosomal protein L10a-1

large ribosomal subunit protein uL1z

60S ribosomal protein L10a

large ribosomal subunit protein uL1-like

ribosomal protein

60S ribosomal protein L10a

60S ribosomal protein L10a-1

60S ribosomal protein L10a

60S ribosomal protein L10a-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	12
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	17
ppo00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	13
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	17
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	18
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	16
hvu00240	Pyrimidine metabolism	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	18

Expression

Expression pattern

Entrez Gene ID^*

832305

817299

103871582

103856517

106424329

106384670

107889172

107959356

102609236

100499715

100527698

100263858

100266487

18098119

18098120

11412225

11428420

101258620

101252594

102587145

102599549

107765506

107771734

9266191

9268245

100502186

100192963

123155974

123071494

123446858

123444833

8057983

100824924

100840807

5725358

The preparation time of this page was 0.2 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	11	3	2	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G08360 (ath-u.5 coexpression data)

Top 50 enrichment test to AT1G08360 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**