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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G09890   Rhamnogalacturonate lyase family protein 
 ath-m.4.bio   AT1G09890   Rhamnogalacturonate lyase family protein 
 ath-m.4.hor   AT1G09890   Rhamnogalacturonate lyase family protein 
 ath-m.4.lig   AT1G09890   Rhamnogalacturonate lyase family protein 
 ath-m.4.str   AT1G09890   Rhamnogalacturonate lyase family protein 
 ath-m.4.tis   AT1G09890   Rhamnogalacturonate lyase family protein 
 ath-u.5   AT2G22620   Rhamnogalacturonate lyase family protein 
 ath-u.5   AT1G09910   Rhamnogalacturonate lyase family protein 
 bra-r.6   103837873   probable rhamnogalacturonate lyase B 
 bra-r.6   103864654   rhamnogalacturonate lyase 
 bra-r.6   103871768   probable rhamnogalacturonate lyase B 
 bna-r.1   106415698   probable rhamnogalacturonate lyase B 
 bna-r.1   106346233   probable rhamnogalacturonate lyase B 
 bna-r.1   106441989   rhamnogalacturonate lyase 
 ghi-r.1   107905134   probable rhamnogalacturonate lyase B 
 ghi-r.1   107957840   rhamnogalacturonate lyase 
 cit-r.1   102607519   probable rhamnogalacturonate lyase B 
 cit-r.1   102606842   probable rhamnogalacturonate lyase B 
 cit-r.1   102608008   probable rhamnogalacturonate lyase B 
 gma-u.5   100815677   probable rhamnogalacturonate lyase B 
 gma-u.5   100814721   probable rhamnogalacturonate lyase B 
 gma-u.5   100814185   rhamnogalacturonate lyase 
 vvi-u.5   100247189   probable rhamnogalacturonate lyase B 
 ppo-u.5   7467220   probable rhamnogalacturonate lyase B 
 ppo-u.5   7491976   rhamnogalacturonate lyase B 
 ppo-u.5   7476448   rhamnogalacturonate lyase B 
 mtr-u.5   11426848   rhamnogalacturonate lyase 
 mtr-u.5   11444270   rhamnogalacturonate lyase 
 mtr-u.5   11442502   rhamnogalacturonate lyase 
 sly-u.5   101248195   uncharacterized LOC101248195 
 sly-u.5   101248481   uncharacterized LOC101248481 
 sly-u.5   101250582   uncharacterized LOC101250582 
 sot-r.1   102588214   probable rhamnogalacturonate lyase B 
 nta-r.1   107822331   uncharacterized LOC107822331 
 nta-r.1   107815910   uncharacterized LOC107815910 
 nta-r.1   107806431   uncharacterized LOC107806431 
 osa-u.5   4346274   uncharacterized LOC4346274 
 osa-u.5   4346275   uncharacterized LOC4346275 
 osa-u.5   4349697   uncharacterized LOC4349697 
 zma-u.5   103643208   probable rhamnogalacturonate lyase B 
 zma-u.5   103654318   rhamnogalacturonate lyase B 
 zma-u.5   100286025   lyase 
 hvu-r.1   123407127   probable rhamnogalacturonate lyase B 
 bdi-r.1   100833182   probable rhamnogalacturonate lyase B 
 bdi-r.1   100846621   probable rhamnogalacturonate lyase B 

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Top 50 coexpressed genes to AT1G09890 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G09890 (ath-m.9 coexpression data)

CoexMap"837521"


athAT1G09890 | Entrez gene ID : 837521      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma hvu bdi sbi cre tae
Paralog 8 3 3 2 3 3 1 3 3 3 1 3 3 3 1 2 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (601 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO MF
GO:0102210 [list] [network] rhamnogalacturonan endolyase activity  (7 genes)  IEA  
GO:0030246 [list] [network] carbohydrate binding  (164 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (272 genes)  ISS  
GO:0003824 [list] [network] catalytic activity  (5718 genes)  IEA  
Protein NP_001321190.1 [sequence] [blastp]
NP_001321191.1 [sequence] [blastp]
NP_001321192.1 [sequence] [blastp]
NP_001321193.1 [sequence] [blastp]
NP_172460.6 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cysk 2,  cysk_nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for NP_001321190.1)
cyto 5,  nucl 2,  cysk 2,  cysk_nucl 2  (predict for NP_001321191.1)
cyto 4,  E.R. 2,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_001321192.1)
cyto 2,  vacu 2,  chlo 1,  extr 1,  E.R._vacu 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001321193.1)
cyto 7,  pero 1,  chlo 1,  cysk_plas 1  (predict for NP_172460.6)
Subcellular
localization
TargetP
other 7  (predict for NP_001321190.1)
other 7  (predict for NP_001321191.1)
other 7  (predict for NP_001321192.1)
other 7  (predict for NP_001321193.1)
other 8  (predict for NP_172460.6)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G09890
ath-m.4.bio
for
AT1G09890
ath-m.4.hor
for
AT1G09890
ath-m.4.lig
for
AT1G09890
ath-m.4.str
for
AT1G09890
ath-m.4.tis
for
AT1G09890
ath-u.5
for
AT2G22620
ath-u.5
for
AT1G09910
bra-r.6
for
103837873
bra-r.6
for
103864654
bra-r.6
for
103871768
bna-r.1
for
106415698
bna-r.1
for
106346233
bna-r.1
for
106441989
ghi-r.1
for
107905134
ghi-r.1
for
107957840
cit-r.1
for
102607519
cit-r.1
for
102606842
cit-r.1
for
102608008
gma-u.5
for
100815677
gma-u.5
for
100814721
gma-u.5
for
100814185
vvi-u.5
for
100247189
ppo-u.5
for
7467220
ppo-u.5
for
7491976
ppo-u.5
for
7476448
mtr-u.5
for
11426848
mtr-u.5
for
11444270
mtr-u.5
for
11442502
sly-u.5
for
101248195
sly-u.5
for
101248481
sly-u.5
for
101250582
sot-r.1
for
102588214
nta-r.1
for
107822331
nta-r.1
for
107815910
nta-r.1
for
107806431
osa-u.5
for
4346274
osa-u.5
for
4346275
osa-u.5
for
4349697
zma-u.5
for
103643208
zma-u.5
for
103654318
zma-u.5
for
100286025
hvu-r.1
for
123407127
bdi-r.1
for
100833182
bdi-r.1
for
100846621


Ortholog ID: 639
Species ath bra bra bra bna bna bna ghi ghi cit gma gma gma vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma hvu bdi bdi
Symbol AT1G09910 LOC103864654 LOC103871768 LOC103871769 LOC106415698 LOC106441989 LOC106391090 LOC107905134 LOC107957840 LOC102631222 LOC100815677 LOC100814185 LOC100786488 LOC100247189 LOC7491976 LOC7467217 LOC7464763 LOC11426848 LOC11444270 LOC11422528 LOC101250582 LOC101260634 LOC101261914 LOC102588214 LOC102595358 LOC102584605 LOC107814403 LOC107831685 LOC107816999 LOC4346274 LOC4346275 LOC4349697 LOC103643208 LOC103654318 LOC100286025 LOC123407127 LOC100833182 LOC100846621
Function* Rhamnogalacturonate lyase family protein rhamnogalacturonate lyase probable rhamnogalacturonate lyase B rhamnogalacturonate lyase B probable rhamnogalacturonate lyase B rhamnogalacturonate lyase rhamnogalacturonate lyase-like probable rhamnogalacturonate lyase B rhamnogalacturonate lyase rhamnogalacturonate lyase B probable rhamnogalacturonate lyase B rhamnogalacturonate lyase probable rhamnogalacturonate lyase B probable rhamnogalacturonate lyase B rhamnogalacturonate lyase B probable rhamnogalacturonate lyase B probable rhamnogalacturonate lyase B rhamnogalacturonate lyase rhamnogalacturonate lyase probable rhamnogalacturonate lyase B uncharacterized LOC101250582 uncharacterized LOC101260634 uncharacterized LOC101261914 probable rhamnogalacturonate lyase B rhamnogalacturonate lyase-like probable rhamnogalacturonate lyase B uncharacterized LOC107814403 uncharacterized LOC107831685 uncharacterized LOC107816999 uncharacterized LOC4346274 uncharacterized LOC4346275 uncharacterized LOC4349697 probable rhamnogalacturonate lyase B rhamnogalacturonate lyase B lyase probable rhamnogalacturonate lyase B probable rhamnogalacturonate lyase B probable rhamnogalacturonate lyase B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00071 Fatty acid degradation 2
bra01212 Fatty acid metabolism 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03430 Mismatch repair 4
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 4
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00564 Glycerophospholipid metabolism 2
cit00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo02010 ABC transporters 2
ppo04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00061 Fatty acid biosynthesis 3
sot00071 Fatty acid degradation 3
sot01212 Fatty acid metabolism 3
sot04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma02010 ABC transporters 2
zma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837523 103864654 103871768 103871769 106415698 106441989 106391090 107905134 107957840 102631222 100815677 100814185 100786488 100247189 7491976 7467217 7464763 11426848 11444270 11422528 101250582 101260634 101261914 102588214 102595358 102584605 107814403 107831685 107816999 4346274 4346275 4349697 103643208 103654318 100286025 123407127 100833182 100846621
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