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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ARP4   actin-related protein 4 
 ath-r.7   ARP4   actin-related protein 4 
 ath-m.9   ARP4   actin-related protein 4 
 ath-e.2   ARP4   actin-related protein 4 
 ath-m.4.bio   ARP4   actin-related protein 4 
 ath-m.4.hor   ARP4   actin-related protein 4 
 ath-m.4.lig   ARP4   actin-related protein 4 
 ath-m.4.str   ARP4   actin-related protein 4 
 ath-m.4.tis   ARP4   actin-related protein 4 
 gma-u.5   100785066   actin-related protein 4 
 gma-u.5   100795390   actin-related protein 4 
 vvi-u.5   100266467   actin-related protein 4 
 ppo-u.5   18105693   actin-related protein 4 
 ppo-u.5   7487099   actin-related protein 4 
 mtr-u.5   25502581   actin-related protein 4 
 mtr-u.5   11439919   actin-related protein 4 
 sly-u.5   101260909   actin-related protein 4 
 osa-u.5   4344621   actin-related protein 4-like 
 zma-u.5   100279759   uncharacterized LOC100279759 

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Top 50 coexpressed genes to ARP4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ARP4 (ath-u.5 coexpression data)

CoexMap"838425"


athARP4 | Entrez gene ID : 838425      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:0048574 [list] [network] long-day photoperiodism, flowering  (20 genes)  IMP  
GO:0048235 [list] [network] pollen sperm cell differentiation  (35 genes)  IMP  
GO:0006325 [list] [network] chromatin organization  (231 genes)  TAS  
GO CC
GO:0000812 [list] [network] Swr1 complex  (13 genes)  IDA  
GO:0035267 [list] [network] NuA4 histone acetyltransferase complex  (14 genes)  IDA  
GO:0031011 [list] [network] Ino80 complex  (16 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0005200 [list] [network] structural constituent of cytoskeleton  (23 genes)  ISS  
Protein NP_564051.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_564051.1)
Subcellular
localization
TargetP
other 8  (predict for NP_564051.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ARP4

.
ath-r.7
for
ARP4

.
ath-m.9
for
ARP4

.
ath-e.2
for
ARP4

.
ath-m.4.bio
for
ARP4

.
ath-m.4.hor
for
ARP4

.
ath-m.4.lig
for
ARP4

.
ath-m.4.str
for
ARP4

.
ath-m.4.tis
for
ARP4

.
gma-u.5
for
100785066

.
gma-u.5
for
100795390

.
vvi-u.5
for
100266467

.
ppo-u.5
for
18105693

.
ppo-u.5
for
7487099

.
mtr-u.5
for
25502581

.
mtr-u.5
for
11439919

.
sly-u.5
for
101260909

.
osa-u.5
for
4344621

.
zma-u.5
for
100279759

.


Ortholog ID: 5199
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol ARP4 LOC100819549 LOC100785066 LOC101260909 LOC4344621 LOC100279759 LOC103835906 LOC103872651 LOC100266467 LOC18105693 LOC7487099 LOC11439919 LOC25502581 LOC123113050 LOC123122570 LOC123451923 LOC123401347 LOC121203564 LOC107945368 LOC106427180 LOC106412164 CHLRE_06g249300v5 LOC8078015 LOC102600647 LOC102619533 LOC100833000 LOC107777825 LOC107818079
Function* actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4-like uncharacterized LOC100279759 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4-like actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4-like uncharacterized protein actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4 actin-related protein 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 4
gma03410 Base excision repair 2
gma00460 Cyanoamino acid metabolism 2
gma00500 Starch and sucrose metabolism 2
gma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03040 Spliceosome 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03420 Nucleotide excision repair 2
sly03040 Spliceosome 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03082 ATP-dependent chromatin remodeling 3
zma03083 Polycomb repressive complex 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
ppo00564 Glycerophospholipid metabolism 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae04120 Ubiquitin mediated proteolysis 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae04120 Ubiquitin mediated proteolysis 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03013 Nucleocytoplasmic transport 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
ghi04382 Cornified envelope formation 6
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
ghi04382 Cornified envelope formation 6
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 3
cre00510 N-Glycan biosynthesis 2
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 3
sbi03030 DNA replication 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot03082 ATP-dependent chromatin remodeling 2
sot03083 Polycomb repressive complex 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838425 100819549 100785066 101260909 4344621 100279759 103835906 103872651 100266467 18105693 7487099 11439919 25502581 123113050 123122570 123451923 123401347 121203564 107945368 106427180 106412164 5722232 8078015 102600647 102619533 100833000 107777825 107818079
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