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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   emb2394   Ribosomal protein L6 family 
 ath-r.7   emb2394   Ribosomal protein L6 family 
 ath-m.9   emb2394   Ribosomal protein L6 family 
 ath-e.2   emb2394   Ribosomal protein L6 family 
 ath-m.4.bio   emb2394   Ribosomal protein L6 family 
 ath-m.4.hor   emb2394   Ribosomal protein L6 family 
 ath-m.4.lig   emb2394   Ribosomal protein L6 family 
 ath-m.4.str   emb2394   Ribosomal protein L6 family 
 ath-m.4.tis   emb2394   Ribosomal protein L6 family 
 bra-r.6   103843623   50S ribosomal protein L6, chloroplastic 
 bra-r.6   103844162   50S ribosomal protein L6, chloroplastic 
 bna-r.1   106401552   50S ribosomal protein L6, chloroplastic 
 ghi-r.1   107918484   50S ribosomal protein L6, chloroplastic 
 ghi-r.1   107895045   50S ribosomal protein L6, chloroplastic 
 cit-r.1   102611043   50S ribosomal protein L6, chloroplastic 
 gma-u.5   100779839   50S ribosomal protein L6, chloroplastic 
 gma-u.5   100801236   50S ribosomal protein L6, chloroplastic 
 vvi-u.5   100263647   large ribosomal subunit protein uL6c 
 ppo-u.5   7462053   50S ribosomal protein L6, chloroplastic 
 ppo-u.5   18103738   50S ribosomal protein L6, chloroplastic-like 
 mtr-u.5   25480870   50S ribosomal protein L6, chloroplastic 
 sly-u.5   101248086   50S ribosomal protein L6, chloroplastic 
 sot-r.1   102601925   50S ribosomal protein L6, chloroplastic 
 nta-r.1   107803875   large ribosomal subunit protein uL6c 
 nta-r.1   107760041   large ribosomal subunit protein uL6c-like 
 osa-u.5   4332868   large ribosomal subunit protein uL6c 
 osa-u.5   4334131   large ribosomal subunit protein uL6c 
 zma-u.5   100282171   50S ribosomal protein L6, chloroplastic-like 
 zma-u.5   100285964   50S ribosomal protein L6, chloroplastic-like 
 tae-r.2   123085916   50S ribosomal protein L6, chloroplastic 
 tae-r.2   123104269   50S ribosomal protein L6, chloroplastic 
 tae-r.2   123092021   50S ribosomal protein L6, chloroplastic 
 hvu-r.1   123448551   50S ribosomal protein L6, chloroplastic 
 sbi-r.1   8080817   50S ribosomal protein L6, chloroplastic 
 bdi-r.1   100831674   50S ribosomal protein L6, chloroplastic 
 cre-r.1   CHLRE_09g415950v5   uncharacterized protein 

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Top 50 coexpressed genes to emb2394 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to emb2394 (ath-u.5 coexpression data)

CoexMap"839273"


athemb2394 | Entrez gene ID : 839273      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 1 2 1 2 1 2 1 1 1 2 2 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP NAS  
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IMP  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_172011.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  extr 1,  E.R. 1,  chlo_mito 1  (predict for NP_172011.1)
Subcellular
localization
TargetP
chlo 4,  mito 3  (predict for NP_172011.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
emb2394
ath-r.7
for
emb2394
ath-m.9
for
emb2394
ath-e.2
for
emb2394
ath-m.4.bio
for
emb2394
ath-m.4.hor
for
emb2394
ath-m.4.lig
for
emb2394
ath-m.4.str
for
emb2394
ath-m.4.tis
for
emb2394
bra-r.6
for
103843623
bra-r.6
for
103844162
bna-r.1
for
106401552
ghi-r.1
for
107918484
ghi-r.1
for
107895045
cit-r.1
for
102611043
gma-u.5
for
100779839
gma-u.5
for
100801236
vvi-u.5
for
100263647
ppo-u.5
for
7462053
ppo-u.5
for
18103738
mtr-u.5
for
25480870
sly-u.5
for
101248086
sot-r.1
for
102601925
nta-r.1
for
107803875
nta-r.1
for
107760041
osa-u.5
for
4332868
osa-u.5
for
4334131
zma-u.5
for
100282171
zma-u.5
for
100285964
tae-r.2
for
123085916
tae-r.2
for
123104269
tae-r.2
for
123092021
hvu-r.1
for
123448551
sbi-r.1
for
8080817
bdi-r.1
for
100831674
cre-r.1
for
CHLRE_09g415950v5


Ortholog ID: 6143
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae tae hvu sbi bdi cre
Symbol emb2394 LOC103843623 LOC103844162 LOC106401552 LOC106371081 LOC106420053 LOC107918484 LOC107895045 LOC102611043 LOC100779839 LOC100801236 LOC100263647 LOC7462053 LOC18103738 LOC25480870 LOC101248086 LOC102601925 LOC107803875 LOC107760041 LOC4332868 LOC4334131 LOC100282171 LOC100285964 LOC123104269 LOC123092021 LOC123097432 LOC123448551 LOC8080817 LOC100831674 CHLRE_09g415950v5
Function* Ribosomal protein L6 family 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic-like 50S ribosomal protein L6, chloroplastic-like 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic large ribosomal subunit protein uL6c 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic-like 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic large ribosomal subunit protein uL6c large ribosomal subunit protein uL6c-like large ribosomal subunit protein uL6c large ribosomal subunit protein uL6c 50S ribosomal protein L6, chloroplastic-like 50S ribosomal protein L6, chloroplastic-like 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic 50S ribosomal protein L6, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 15
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 8
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 14
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839273 103843623 103844162 106401552 106371081 106420053 107918484 107895045 102611043 100779839 100801236 100263647 7462053 18103738 25480870 101248086 102601925 107803875 107760041 4332868 4334131 100282171 100285964 123104269 123092021 123097432 123448551 8080817 100831674 5722374
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