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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   TPR4   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103844246   uncharacterized LOC103844246 
 bna-r.1   106371005   uncharacterized LOC106371005 
 bna-r.1   106401247   uncharacterized LOC106401247 
 ghi-r.1   107914960   uncharacterized LOC107914960 
 ghi-r.1   107914959   uncharacterized LOC107914959 
 ghi-r.1   107886606   uncharacterized LOC107886606 
 cit-r.1   102625304   uncharacterized LOC102625304 
 gma-u.5   100783167   uncharacterized LOC100783167 
 gma-u.5   100805375   uncharacterized LOC100805375 
 vvi-u.5   100261301   uncharacterized LOC100261301 
 mtr-u.5   11424438   uncharacterized LOC11424438 
 sly-u.5   101245498   uncharacterized LOC101245498 
 sot-r.1   102581917   uncharacterized LOC102581917 
 nta-r.1   107781058   uncharacterized LOC107781058 
 nta-r.1   107821231   uncharacterized LOC107821231 

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Top 50 coexpressed genes to TPR4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TPR4 (ath-u.5 coexpression data)

CoexMap"839500"


athTPR4 | Entrez gene ID : 839500      
Species ath bra bna ghi cit gma vvi mtr sly sot nta sbi cre ppo tae zma osa bdi hvu
Paralog 9 1 2 3 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006396 [list] [network] RNA processing  (588 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_563709.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 5,  nucl 2,  plas 1,  cyto_nucl 1  (predict for NP_563709.1)
Subcellular
localization
TargetP
other 8  (predict for NP_563709.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
TPR4
ath-r.7
for
TPR4
ath-m.9
for
TPR4
ath-e.2
for
TPR4
ath-m.4.bio
for
TPR4
ath-m.4.hor
for
TPR4
ath-m.4.lig
for
TPR4
ath-m.4.str
for
TPR4
ath-m.4.tis
for
TPR4
bra-r.6
for
103844246
bna-r.1
for
106371005
bna-r.1
for
106401247
ghi-r.1
for
107914960
ghi-r.1
for
107914959
ghi-r.1
for
107886606
cit-r.1
for
102625304
gma-u.5
for
100783167
gma-u.5
for
100805375
vvi-u.5
for
100261301
mtr-u.5
for
11424438
sly-u.5
for
101245498
sot-r.1
for
102581917
nta-r.1
for
107781058
nta-r.1
for
107821231


Ortholog ID: 12490
Species ath bra bna bna ghi ghi ghi cit gma gma vvi mtr sly sot nta nta
Symbol TPR4 LOC103844246 LOC106371005 LOC106401247 LOC107914960 LOC107914959 LOC107886606 LOC102625304 LOC100783167 LOC100805375 LOC100261301 LOC11424438 LOC101245498 LOC102581917 LOC107781058 LOC107821231
Function* Tetratricopeptide repeat (TPR)-like superfamily protein uncharacterized LOC103844246 uncharacterized LOC106371005 uncharacterized LOC106401247 uncharacterized LOC107914960 uncharacterized LOC107914959 uncharacterized LOC107886606 uncharacterized LOC102625304 uncharacterized LOC100783167 uncharacterized LOC100805375 uncharacterized LOC100261301 uncharacterized LOC11424438 uncharacterized LOC101245498 uncharacterized LOC102581917 uncharacterized LOC107781058 uncharacterized LOC107821231
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00051 Fructose and mannose metabolism 3
bra00480 Glutathione metabolism 2
bra03010 Ribosome 2
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 5
bna00250 Alanine, aspartate and glutamate metabolism 5
bna00260 Glycine, serine and threonine metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
bna00710 Carbon fixation by Calvin cycle 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 4
bna00250 Alanine, aspartate and glutamate metabolism 4
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00280 Valine, leucine and isoleucine degradation 2
cit00640 Propanoate metabolism 2
cit01210 2-Oxocarboxylic acid metabolism 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 2
gma00350 Tyrosine metabolism 2
gma00360 Phenylalanine metabolism 2
gma00410 beta-Alanine metabolism 2
gma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00010 Glycolysis / Gluconeogenesis 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839500 103844246 106371005 106401247 107914960 107914959 107886606 102625304 100783167 100805375 100261301 11424438 101245498 102581917 107781058 107821231
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