ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	SAM1	S-adenosylmethionine synthetase 1
ath-r.7	SAM1	S-adenosylmethionine synthetase 1
ath-m.9	SAM1	S-adenosylmethionine synthetase 1
ath-e.2	SAM1	S-adenosylmethionine synthetase 1
ath-m.4.bio	SAM1	S-adenosylmethionine synthetase 1
ath-m.4.hor	SAM1	S-adenosylmethionine synthetase 1
ath-m.4.lig	SAM1	S-adenosylmethionine synthetase 1
ath-m.4.str	SAM1	S-adenosylmethionine synthetase 1
ath-m.4.tis	SAM1	S-adenosylmethionine synthetase 1
ath-u.5	MAT3	methionine adenosyltransferase 3
ath-u.5	MTO3	S-adenosylmethionine synthetase family protein
ath-u.5	SAM-2	S-adenosylmethionine synthetase 2
gma-u.5	100778809	S-adenosylmethionine synthase 1
gma-u.5	100787994	S-adenosylmethionine synthase
gma-u.5	100794248	S-adenosylmethionine synthase 3
vvi-u.5	METK5	S-adenosylmethionine synthetase 5
vvi-u.5	METK2	S-adenosylmethionine synthetase 2
ppo-u.5	18109929	S-adenosylmethionine synthase 1-like
ppo-u.5	7468135	S-adenosylmethionine synthase 3
ppo-u.5	7478878	S-adenosylmethionine synthase 2-like
mtr-u.5	11435308	S-adenosylmethionine synthase-like
mtr-u.5	11444997	S-adenosylmethionine synthase
mtr-u.5	11432371	S-adenosylmethionine synthase 3
sly-u.5	SAM1	S-adenosyl-L-methionine synthetase
sly-u.5	SAM2	S-adenosylmethionine synthase 2
sly-u.5	101245012	S-adenosylmethionine synthase 3-like
osa-u.5	4325163	S-adenosylmethionine synthase 3-like
osa-u.5	4326996	S-adenosylmethionine synthase 2-like
osa-u.5	4337733	S-adenosylmethionine synthase 1-like
zma-u.5	100282324	S-adenosylmethionine synthetase 1
zma-u.5	100279822	methionine adenosyltransferase
zma-u.5	100194360	S-adenosylmethionine synthase 1

Top 50 coexpressed genes to SAM1 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to SAM1 (ath-u.5 coexpression data)

CoexMap"839501"

[Cytoscape]

Annotation

functional annotation

KEGG

ath00270 [list] [network] Cysteine and methionine metabolism (125 genes)

ath00670 [list] [network] One carbon pool by folate (42 genes)

ath00999 [list] [network] Biosynthesis of various plant secondary metabolites (70 genes)

ath01230 [list] [network] Biosynthesis of amino acids (242 genes)

ath01240 [list] [network] Biosynthesis of cofactors (237 genes)

GO BP

GO:0009693 [list] [network] ethylene biosynthetic process

(22 genes)

TAS

GO CC

GO:0009505 [list] [network] plant-type cell wall	(504 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

GO:0004478 [list] [network] methionine adenosyltransferase activity	(3 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_171751.1 [sequence] [blastp]
NP_849577.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cysk 4	(predict for NP_171751.1)
cyto 6, cysk 4	(predict for NP_849577.1)

Subcellular
localization
TargetP

other 8	(predict for NP_171751.1)
other 8	(predict for NP_849577.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for SAM1	ath-r.7 for SAM1	ath-m.9 for SAM1	ath-e.2 for SAM1	ath-m.4.bio for SAM1	ath-m.4.hor for SAM1	ath-m.4.lig for SAM1	ath-m.4.str for SAM1	ath-m.4.tis for SAM1	ath-u.5 for MAT3	ath-u.5 for MTO3	ath-u.5 for SAM-2	gma-u.5 for 100778809	gma-u.5 for 100787994	gma-u.5 for 100794248	vvi-u.5 for METK5	vvi-u.5 for METK2	ppo-u.5 for 18109929	ppo-u.5 for 7468135	ppo-u.5 for 7478878	mtr-u.5 for 11435308	mtr-u.5 for 11444997	mtr-u.5 for 11432371	sly-u.5 for SAM1	sly-u.5 for SAM2	sly-u.5 for 101245012	osa-u.5 for 4325163	osa-u.5 for 4326996	osa-u.5 for 4337733	zma-u.5 for 100282324	zma-u.5 for 100279822	zma-u.5 for 100194360

Ortholog

Ortholog ID: 562

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

MTO3

SAM1

METK4

METK5

SAM2

SAM3

METK1

Function^*

S-adenosylmethionine synthetase family protein

S-adenosylmethionine synthetase 1

S-adenosylmethionine synthase 2

S-adenosylmethionine synthase 3

S-adenosylmethionine synthase 2

S-adenosylmethionine synthase 2-like

S-adenosylmethionine synthase 1

S-adenosylmethionine synthase

S-adenosylmethionine synthase 1

S-adenosylmethionine synthetase 4

S-adenosylmethionine synthetase 5

S-adenosylmethionine synthase 1-like

S-adenosylmethionine synthase 2-like

S-adenosylmethionine synthase

S-adenosylmethionine synthase-like

S-adenosylmethionine synthase 2

S-adenosyl-L-methionine synthetase

S-adenosylmethionine synthase 1-like

S-adenosylmethionine synthase 2

S-adenosylmethionine synthase 2-like

S-adenosylmethionine synthase 3-like

S-adenosylmethionine synthase 1-like

methionine adenosyltransferase

S-adenosylmethionine synthase 1

S-adenosylmethionine synthase

S-adenosylmethionine synthase 3

S-adenosylmethionine synthase 2

S-adenosylmethionine synthase 3

S-adenosylmethionine synthase 1

S-adenosylmethionine synthase 3

S-adenosylmethionine synthase 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	7
ath01230	Biosynthesis of amino acids	6
ath00670	One carbon pool by folate	5
ath01240	Biosynthesis of cofactors	4
ath00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00270	Cysteine and methionine metabolism	5
bra01230	Biosynthesis of amino acids	5
bra00670	One carbon pool by folate	3
bra00999	Biosynthesis of various plant secondary metabolites	3
bra01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	5
bra01250	Biosynthesis of nucleotide sugars	5
bra00270	Cysteine and methionine metabolism	3
bra01230	Biosynthesis of amino acids	3
bra01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	9
bna00670	One carbon pool by folate	9
bna00999	Biosynthesis of various plant secondary metabolites	9
bna01230	Biosynthesis of amino acids	9
bna01240	Biosynthesis of cofactors	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	9
bna00670	One carbon pool by folate	9
bna00999	Biosynthesis of various plant secondary metabolites	9
bna01230	Biosynthesis of amino acids	9
bna01240	Biosynthesis of cofactors	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	7
ghi00670	One carbon pool by folate	7
ghi00999	Biosynthesis of various plant secondary metabolites	7
ghi01230	Biosynthesis of amino acids	7
ghi01240	Biosynthesis of cofactors	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	7
ghi00670	One carbon pool by folate	7
ghi00999	Biosynthesis of various plant secondary metabolites	7
ghi01230	Biosynthesis of amino acids	7
ghi01240	Biosynthesis of cofactors	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00270	Cysteine and methionine metabolism	4
cit01230	Biosynthesis of amino acids	4
cit01200	Carbon metabolism	3
cit00940	Phenylpropanoid biosynthesis	3
cit00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01230	Biosynthesis of amino acids	10
cit00270	Cysteine and methionine metabolism	5
cit00670	One carbon pool by folate	5
cit01240	Biosynthesis of cofactors	4
cit00260	Glycine, serine and threonine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00670	One carbon pool by folate	8
gma01230	Biosynthesis of amino acids	7
gma01200	Carbon metabolism	6
gma01240	Biosynthesis of cofactors	6
gma00270	Cysteine and methionine metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00670	One carbon pool by folate	7
gma01240	Biosynthesis of cofactors	6
gma00270	Cysteine and methionine metabolism	5
gma01230	Biosynthesis of amino acids	5
gma01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00670	One carbon pool by folate	7
vvi00940	Phenylpropanoid biosynthesis	6
vvi01230	Biosynthesis of amino acids	5
vvi00260	Glycine, serine and threonine metabolism	4
vvi00630	Glyoxylate and dicarboxylate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	8
ppo01230	Biosynthesis of amino acids	5
ppo01240	Biosynthesis of cofactors	5
ppo01200	Carbon metabolism	4
ppo00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00270	Cysteine and methionine metabolism	11
ppo01230	Biosynthesis of amino acids	10
ppo00670	One carbon pool by folate	8
ppo01240	Biosynthesis of cofactors	6
ppo00450	Selenocompound metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	9
mtr00270	Cysteine and methionine metabolism	8
mtr00670	One carbon pool by folate	8
mtr01240	Biosynthesis of cofactors	5
mtr01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00920	Sulfur metabolism	8
sly01320	Sulfur cycle	6
sly01230	Biosynthesis of amino acids	3
sly01240	Biosynthesis of cofactors	3
sly00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01230	Biosynthesis of amino acids	5
sly00670	One carbon pool by folate	4
sly00270	Cysteine and methionine metabolism	4
sly01200	Carbon metabolism	3
sly01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot03040	Spliceosome	2
sot03083	Polycomb repressive complex	2
sot04141	Protein processing in endoplasmic reticulum	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00670	One carbon pool by folate	7
sot01240	Biosynthesis of cofactors	6
sot00270	Cysteine and methionine metabolism	6
sot01230	Biosynthesis of amino acids	5
sot01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	8
nta01230	Biosynthesis of amino acids	8
nta00670	One carbon pool by folate	6
nta00999	Biosynthesis of various plant secondary metabolites	6
nta01240	Biosynthesis of cofactors	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	8
nta01230	Biosynthesis of amino acids	8
nta00670	One carbon pool by folate	6
nta00999	Biosynthesis of various plant secondary metabolites	6
nta01240	Biosynthesis of cofactors	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00270	Cysteine and methionine metabolism	2
osa01230	Biosynthesis of amino acids	2
osa00220	Arginine biosynthesis	2
osa00250	Alanine, aspartate and glutamate metabolism	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	8
osa01230	Biosynthesis of amino acids	6
osa00270	Cysteine and methionine metabolism	4
osa00670	One carbon pool by folate	4
osa00360	Phenylalanine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	6
zma01230	Biosynthesis of amino acids	6
zma00670	One carbon pool by folate	5
zma01240	Biosynthesis of cofactors	3
zma00450	Selenocompound metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	9
zma00270	Cysteine and methionine metabolism	7
zma00940	Phenylpropanoid biosynthesis	6
zma00670	One carbon pool by folate	5
zma01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00670	One carbon pool by folate	14
tae00270	Cysteine and methionine metabolism	12
tae01230	Biosynthesis of amino acids	11
tae01240	Biosynthesis of cofactors	8
tae00999	Biosynthesis of various plant secondary metabolites	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	7
hvu00270	Cysteine and methionine metabolism	6
hvu00670	One carbon pool by folate	6
hvu01240	Biosynthesis of cofactors	5
hvu00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	6
hvu00270	Cysteine and methionine metabolism	5
hvu00670	One carbon pool by folate	5
hvu01200	Carbon metabolism	4
hvu01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	11
sbi00360	Phenylalanine metabolism	7
sbi01230	Biosynthesis of amino acids	5
sbi00270	Cysteine and methionine metabolism	4
sbi00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01230	Biosynthesis of amino acids	8
sbi00270	Cysteine and methionine metabolism	6
sbi00670	One carbon pool by folate	6
sbi01240	Biosynthesis of cofactors	4
sbi00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	5
bdi00670	One carbon pool by folate	5
bdi00270	Cysteine and methionine metabolism	4
bdi01240	Biosynthesis of cofactors	3
bdi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	8
bdi00270	Cysteine and methionine metabolism	6
bdi00670	One carbon pool by folate	5
bdi00450	Selenocompound metabolism	3
bdi01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01230	Biosynthesis of amino acids	5
cre00270	Cysteine and methionine metabolism	5
cre00670	One carbon pool by folate	4
cre01200	Carbon metabolism	4
cre00260	Glycine, serine and threonine metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

821003

839501

103849483

103839308

106437889

125596940

107923999

107922739

102622739

102618655

100787994

100777770

100251171

100243560

7495188

7478878

11444997

11435308

101247506

544302

102588511

102578902

107801863

107764500

4325163

4337733

100279822

100194360

123136783

123145026

123406099

123405946

110433826

8071284

100844978

100843457

5722217

The preparation time of this page was 0.1 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	12	3	2	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SAM1 (ath-u.5 coexpression data)

Top 50 enrichment test to SAM1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**