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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-r.7   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-m.9   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-e.2   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-m.4.bio   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-m.4.hor   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-m.4.lig   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-m.4.str   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-m.4.tis   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 ath-u.5   AT3G15970   NUP50 (Nucleoporin 50 kDa) protein 
 gma-u.5   100816316   nuclear pore complex protein NUP50A 
 gma-u.5   100797325   nuclear pore complex protein NUP50A 
 vvi-u.5   100265296   nuclear pore complex protein NUP50A 
 ppo-u.5   7478386   nuclear pore complex protein NUP50A 
 ppo-u.5   7486642   nuclear pore complex protein NUP50A 
 mtr-u.5   25491384   nuclear pore complex protein NUP50A 
 sly-u.5   101248860   nuclear pore complex protein NUP50A 
 sly-u.5   101246934   nuclear pore complex protein NUP50A 
 osa-u.5   4338497   nuclear pore complex protein NUP50B 
 zma-u.5   100273971   Nuclear pore complex protein NUP50A 
 zma-u.5   100284246   uncharacterized LOC100284246 

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Top 50 coexpressed genes to AT1G52380 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G52380 (ath-u.5 coexpression data)

CoexMap"841668"


athAT1G52380 | Entrez gene ID : 841668      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 2 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0046907 [list] [network] intracellular transport  (278 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001322286.1 [sequence] [blastp]
NP_001322287.1 [sequence] [blastp]
NP_001322288.1 [sequence] [blastp]
NP_564606.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  plas 1  (predict for NP_001322286.1)
nucl 9,  plas 1  (predict for NP_001322287.1)
nucl 9,  plas 1  (predict for NP_001322288.1)
nucl 9,  plas 1  (predict for NP_564606.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001322286.1)
other 9  (predict for NP_001322287.1)
other 9  (predict for NP_001322288.1)
other 9  (predict for NP_564606.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G52380
ath-r.7
for
AT1G52380
ath-m.9
for
AT1G52380
ath-e.2
for
AT1G52380
ath-m.4.bio
for
AT1G52380
ath-m.4.hor
for
AT1G52380
ath-m.4.lig
for
AT1G52380
ath-m.4.str
for
AT1G52380
ath-m.4.tis
for
AT1G52380
ath-u.5
for
AT3G15970
gma-u.5
for
100816316
gma-u.5
for
100797325
vvi-u.5
for
100265296
ppo-u.5
for
7478386
ppo-u.5
for
7486642
mtr-u.5
for
25491384
sly-u.5
for
101248860
sly-u.5
for
101246934
osa-u.5
for
4338497
zma-u.5
for
100273971
zma-u.5
for
100284246


Ortholog ID: 4380
Species ath ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol AT3G15970 AT1G52380 LOC103868506 LOC106345735 LOC125609491 LOC107951895 LOC107951997 LOC102623478 LOC100797325 LOC100816316 LOC100265296 LOC7478386 LOC7486642 LOC25491384 LOC101248860 LOC101246934 LOC102602342 LOC102580884 LOC107771430 LOC107801982 LOC4338497 LOC100273971 LOC100284246 LOC123129102 LOC123156512 LOC123407230 LOC123441037 LOC8069511 LOC8057557 LOC100824162 LOC100823443 CHLRE_15g641000v5
Function* NUP50 (Nucleoporin 50 kDa) protein NUP50 (Nucleoporin 50 kDa) protein nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A-like nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A-like nuclear pore complex protein NUP50B nuclear pore complex protein NUP50B nuclear pore complex protein NUP50B Nuclear pore complex protein NUP50A uncharacterized LOC100284246 nuclear pore complex protein NUP50B nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A-like nuclear pore complex protein NUP50A-like nuclear pore complex protein NUP50A nuclear pore complex protein NUP50B nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03010 Ribosome 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00520 Amino sugar and nucleotide sugar metabolism 2
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu03013 Nucleocytoplasmic transport 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820841 841668 103868506 106345735 125609491 107951895 107951997 102623478 100797325 100816316 100265296 7478386 7486642 25491384 101248860 101246934 102602342 102580884 107771430 107801982 4338497 100273971 100284246 123129102 123156512 123407230 123441037 8069511 8057557 100824162 100823443 5728617
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