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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SGA2   ASF1 like histone chaperone 
 ath-r.7   SGA2   ASF1 like histone chaperone 
 ath-m.9   SGA2   ASF1 like histone chaperone 
 ath-e.2   SGA2   ASF1 like histone chaperone 
 ath-m.4.bio   SGA2   ASF1 like histone chaperone 
 ath-m.4.hor   SGA2   ASF1 like histone chaperone 
 ath-m.4.lig   SGA2   ASF1 like histone chaperone 
 ath-m.4.str   SGA2   ASF1 like histone chaperone 
 ath-m.4.tis   SGA2   ASF1 like histone chaperone 
 ath-u.5   ASF1B   anti- silencing function 1b 
 bra-r.6   103831126   probable histone chaperone ASF1A 
 bra-r.6   103852330   probable histone chaperone ASF1A 
 bna-r.1   106353908   probable histone chaperone ASF1A 
 bna-r.1   106366736   probable histone chaperone ASF1A 
 bna-r.1   106392525   probable histone chaperone ASF1A 
 ghi-r.1   107912764   histone chaperone ASF1B 
 ghi-r.1   107912907   histone chaperone ASF1B 
 cit-r.1   102621733   histone chaperone ASF1B 
 cit-r.1   102619413   probable histone chaperone ASF1A 
 gma-u.5   100801694   histone chaperone ASF1B 
 gma-u.5   100305970   uncharacterized LOC100305970 
 vvi-u.5   100244498   histone chaperone ASF1B 
 vvi-u.5   100266239   histone chaperone ASF1B 
 ppo-u.5   7487360   histone chaperone ASF1B 
 ppo-u.5   18099430   probable histone chaperone ASF1A 
 mtr-u.5   11429307   histone chaperone ASF1B 
 sly-u.5   101254449   probable histone chaperone ASF1A 
 sly-u.5   101263022   probable histone chaperone ASF1A 
 sly-u.5   101264476   histone chaperone ASF1B 
 sot-r.1   102599244   probable histone chaperone ASF1A 
 sot-r.1   102604221   histone chaperone ASF1B-like 
 sot-r.1   102600796   histone chaperone ASF1B 
 nta-r.1   107798502   putative histone chaperone ASF1A 
 nta-r.1   107789525   putative histone chaperone ASF1A 
 nta-r.1   107805423   putative histone chaperone ASF1A 
 osa-u.5   4339550   probable histone chaperone ASF1A 
 zma-u.5   100283736   uncharacterized LOC100283736 
 zma-u.5   103635303   histone chaperone ASF1B 
 tae-r.2   123144502   probable histone chaperone ASF1A 
 tae-r.2   123067087   probable histone chaperone ASF1A 
 tae-r.2   123061854   histone chaperone ASF1B 
 hvu-r.1   123444131   histone chaperone ASF1B 
 hvu-r.1   123449521   probable histone chaperone ASF1A 
 sbi-r.1   8063556   histone chaperone ASF1B 
 bdi-r.1   100834908   probable histone chaperone ASF1A 
 cre-r.1   CHLRE_08g376350v5   uncharacterized protein 

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Top 50 coexpressed genes to SGA2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SGA2 (ath-u.5 coexpression data)

CoexMap"842992"


athSGA2 | Entrez gene ID : 842992      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 2 2 2 2 2 1 3 3 3 1 2 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031567 [list] [network] mitotic cell size control checkpoint signaling  (2 genes)  IMP  
GO:0008361 [list] [network] regulation of cell size  (26 genes)  IMP  
GO:0010091 [list] [network] trichome branching  (31 genes)  IMP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (43 genes)  IMP  
GO:0051301 [list] [network] cell division  (192 genes)  IMP  
GO CC
GO:0030875 [list] [network] rDNA protrusion  (5 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_176846.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  mito 2,  extr 2,  chlo_mito 2,  E.R. 1  (predict for NP_176846.1)
Subcellular
localization
TargetP
scret 8,  other 4  (predict for NP_176846.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SGA2
ath-r.7
for
SGA2
ath-m.9
for
SGA2
ath-e.2
for
SGA2
ath-m.4.bio
for
SGA2
ath-m.4.hor
for
SGA2
ath-m.4.lig
for
SGA2
ath-m.4.str
for
SGA2
ath-m.4.tis
for
SGA2
ath-u.5
for
ASF1B
bra-r.6
for
103831126
bra-r.6
for
103852330
bna-r.1
for
106353908
bna-r.1
for
106366736
bna-r.1
for
106392525
ghi-r.1
for
107912764
ghi-r.1
for
107912907
cit-r.1
for
102621733
cit-r.1
for
102619413
gma-u.5
for
100801694
gma-u.5
for
100305970
vvi-u.5
for
100244498
vvi-u.5
for
100266239
ppo-u.5
for
7487360
ppo-u.5
for
18099430
mtr-u.5
for
11429307
sly-u.5
for
101254449
sly-u.5
for
101263022
sly-u.5
for
101264476
sot-r.1
for
102599244
sot-r.1
for
102604221
sot-r.1
for
102600796
nta-r.1
for
107798502
nta-r.1
for
107789525
nta-r.1
for
107805423
osa-u.5
for
4339550
zma-u.5
for
100283736
zma-u.5
for
103635303
tae-r.2
for
123144502
tae-r.2
for
123067087
tae-r.2
for
123061854
hvu-r.1
for
123444131
hvu-r.1
for
123449521
sbi-r.1
for
8063556
bdi-r.1
for
100834908
cre-r.1
for
CHLRE_08g376350v5


Ortholog ID: 3844
Species ath ath bra bra bna bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sly sly sot sot sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol SGA2 ASF1B LOC103831126 LOC103852330 LOC106366736 LOC106392525 LOC106405784 LOC107912764 LOC107912907 LOC102621733 LOC102619413 LOC100801694 LOC100305970 LOC100244498 LOC100266239 LOC7487360 LOC18099430 LOC11429307 LOC101254449 LOC101263022 LOC101264476 LOC102599244 LOC102604221 LOC102600796 LOC107825459 LOC107775902 LOC107770991 LOC4339550 LOC100283736 LOC103635303 LOC123144502 LOC123070546 LOC123078956 LOC123444131 LOC123449521 LOC8063556 LOC100834908 CHLRE_08g376350v5
Function* ASF1 like histone chaperone anti- silencing function 1b probable histone chaperone ASF1A probable histone chaperone ASF1A probable histone chaperone ASF1A probable histone chaperone ASF1A probable histone chaperone ASF1A histone chaperone ASF1B histone chaperone ASF1B histone chaperone ASF1B probable histone chaperone ASF1A histone chaperone ASF1B uncharacterized LOC100305970 histone chaperone ASF1B histone chaperone ASF1B histone chaperone ASF1B probable histone chaperone ASF1A histone chaperone ASF1B probable histone chaperone ASF1A probable histone chaperone ASF1A histone chaperone ASF1B probable histone chaperone ASF1A histone chaperone ASF1B-like histone chaperone ASF1B putative histone chaperone ASF1A histone chaperone ASF1B-like histone chaperone ASF1B-like probable histone chaperone ASF1A uncharacterized LOC100283736 histone chaperone ASF1B probable histone chaperone ASF1A probable histone chaperone ASF1A histone chaperone ASF1B histone chaperone ASF1B probable histone chaperone ASF1A histone chaperone ASF1B probable histone chaperone ASF1A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 3
ath03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03040 Spliceosome 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
gma03410 Base excision repair 6
gma03420 Nucleotide excision repair 6
gma03430 Mismatch repair 6
gma03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03030 DNA replication 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03420 Nucleotide excision repair 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 5
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
sly03440 Homologous recombination 3
sly00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03018 RNA degradation 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 8
sot00240 Pyrimidine metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00230 Purine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta00230 Purine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00230 Purine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 6
zma03420 Nucleotide excision repair 4
zma03430 Mismatch repair 4
zma03410 Base excision repair 3
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 4
zma03410 Base excision repair 3
zma03420 Nucleotide excision repair 3
zma03430 Mismatch repair 3
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 13
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 2
hvu00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 8
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842992 833791 103831126 103852330 106366736 106392525 106405784 107912764 107912907 102621733 102619413 100801694 100305970 100244498 100266239 7487360 18099430 11429307 101254449 101263022 101264476 102599244 102604221 102600796 107825459 107775902 107770991 4339550 100283736 103635303 123144502 123070546 123078956 123444131 123449521 8063556 100834908 5719938
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