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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PUB43   ARM repeat superfamily protein 
 ath-r.7   PUB43   ARM repeat superfamily protein 
 ath-m.9   PUB43   ARM repeat superfamily protein 
 ath-e.2   PUB43   ARM repeat superfamily protein 
 ath-m.4.bio   PUB43   ARM repeat superfamily protein 
 ath-m.4.hor   PUB43   ARM repeat superfamily protein 
 ath-m.4.lig   PUB43   ARM repeat superfamily protein 
 ath-m.4.str   PUB43   ARM repeat superfamily protein 
 ath-m.4.tis   PUB43   ARM repeat superfamily protein 
 ath-u.5   SAUL1   senescence-associated E3 ubiquitin ligase 1 
 gma-u.5   100789746   U-box domain-containing protein 44 
 gma-u.5   100815928   U-box domain-containing protein 44 
 vvi-u.5   100252979   U-box domain-containing protein 43 
 ppo-u.5   7485648   U-box domain-containing protein 44 
 ppo-u.5   7496852   U-box domain-containing protein 44 
 mtr-u.5   25490327   U-box domain-containing protein 44 
 sly-u.5   101262514   U-box domain-containing protein 44 
 osa-u.5   4333620   U-box domain-containing protein 44 
 osa-u.5   9269482   U-box domain-containing protein 44 
 zma-u.5   103650422   U-box domain-containing protein 43 
 zma-u.5   103640871   U-box domain-containing protein 43 
 zma-u.5   100502487   U-box domain-containing protein 44 

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Top 50 coexpressed genes to PUB43 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PUB43 (ath-u.5 coexpression data)

CoexMap"843971"


athPUB43 | Entrez gene ID : 843971      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 2 1 2 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IEA  
Protein NP_001077833.1 [sequence] [blastp]
NP_177765.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  vacu 1,  cysk_nucl 1  (predict for NP_001077833.1)
cyto 4,  nucl 3,  vacu 1,  cysk_nucl 1  (predict for NP_177765.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001077833.1)
other 8  (predict for NP_177765.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PUB43
ath-r.7
for
PUB43
ath-m.9
for
PUB43
ath-e.2
for
PUB43
ath-m.4.bio
for
PUB43
ath-m.4.hor
for
PUB43
ath-m.4.lig
for
PUB43
ath-m.4.str
for
PUB43
ath-m.4.tis
for
PUB43
ath-u.5
for
SAUL1
gma-u.5
for
100789746
gma-u.5
for
100815928
vvi-u.5
for
100252979
ppo-u.5
for
7485648
ppo-u.5
for
7496852
mtr-u.5
for
25490327
sly-u.5
for
101262514
osa-u.5
for
4333620
osa-u.5
for
9269482
zma-u.5
for
103650422
zma-u.5
for
103640871
zma-u.5
for
100502487


Ortholog ID: 5012
Species ath ath bra bra bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol SAUL1 PUB43 LOC103832097 LOC103835778 LOC106410599 LOC107945240 LOC107922124 LOC102623719 LOC100815928 LOC100789746 LOC100252979 LOC7496852 LOC7485648 LOC25490327 LOC101262514 LOC102601894 LOC107801161 LOC4333620 LOC9269482 LOC103640871 LOC103650422 LOC123140149 LOC123102810 LOC123451995 LOC123403977 LOC8061227 LOC8066457 LOC100835332 LOC100840365
Function* senescence-associated E3 ubiquitin ligase 1 ARM repeat superfamily protein U-box domain-containing protein 43 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 43 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 43 U-box domain-containing protein 43 U-box domain-containing protein 24 U-box domain-containing protein 44 U-box domain-containing protein 44-like U-box domain-containing protein 24-like U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 44 U-box domain-containing protein 43
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00030 Pentose phosphate pathway 2
ath00480 Glutathione metabolism 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00020 Citrate cycle (TCA cycle) 3
cit01200 Carbon metabolism 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
vvi04626 Plant-pathogen interaction 2
vvi00541 Biosynthesis of various nucleotide sugars 2
vvi01250 Biosynthesis of nucleotide sugars 2
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00510 N-Glycan biosynthesis 2
ppo00513 Various types of N-glycan biosynthesis 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00510 N-Glycan biosynthesis 2
ppo00513 Various types of N-glycan biosynthesis 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00511 Other glycan degradation 2
sly04075 Plant hormone signal transduction 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot03013 Nucleocytoplasmic transport 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 2
osa04075 Plant hormone signal transduction 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00510 N-Glycan biosynthesis 2
tae00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838668 843971 103832097 103835778 106410599 107945240 107922124 102623719 100815928 100789746 100252979 7496852 7485648 25490327 101262514 102601894 107801161 4333620 9269482 103640871 103650422 123140149 123102810 123451995 123403977 8061227 8066457 100835332 100840365
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