Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.4   UBP5   ubiquitin-specific protease 5 
 ath-r.6   UBP5   ubiquitin-specific protease 5 
 ath-m.9   UBP5   ubiquitin-specific protease 5 
 ath-m.4.notissue   UBP5   ubiquitin-specific protease 5 
 ath-m.4.tis   UBP5   ubiquitin-specific protease 5 
 ath-m.4.str   UBP5   ubiquitin-specific protease 5 
 ath-m.4.hor   UBP5   ubiquitin-specific protease 5 
 ath-m.4.bio   UBP5   ubiquitin-specific protease 5 
 ath-m.4.lig   UBP5   ubiquitin-specific protease 5 
 ath-e.1   UBP5   ubiquitin-specific protease 5 
 gma-u.4   100794067   ubiquitin carboxyl-terminal hydrolase 5 
 gma-u.4   100785944   ubiquitin carboxyl-terminal hydrolase 5 
 ppo-u.4   18106097   ubiquitin carboxyl-terminal hydrolase 5 
 ppo-u.4   7479647   ubiquitin carboxyl-terminal hydrolase 5 
 mtr-u.4   11408935   ubiquitin carboxyl-terminal hydrolase 5 
 sly-u.4   101246751   ubiquitin carboxyl-terminal hydrolase 5 
 osa-u.4   4350498   ubiquitin carboxyl-terminal hydrolase 5 

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Top 50 coexpressed genes to UBP5 (ath-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 ath3040   Spliceosome  6 180 5.23
 ath3018   RNA degradation  4 105 3.84
 ath4120   Ubiquitin mediated proteolysis  3 119 2.47
 ath3420   Nucleotide excision repair  2 55 2.07
 ath3015   mRNA surveillance pathway  2 119 -

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ath:UBP5 (ubiquitin-specific protease 5) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition specific* Reference

ath-u.4
for
UBP5
ath-r.6
for
UBP5
ath-m.9
for
UBP5
ath-m.4.notissue
for
UBP5
ath-m.4.tis
for
UBP5
ath-m.4.str
for
UBP5
ath-m.4.hor
for
UBP5
ath-m.4.bio
for
UBP5
ath-m.4.lig
for
UBP5
ath-e.1
for
UBP5
gma-u.4
for
100794067
gma-u.4
for
100785944
ppo-u.4
for
18106097
ppo-u.4
for
7479647
mtr-u.4
for
11408935
sly-u.4
for
101246751
osa-u.4
for
4350498
1 emb1967 Forkhead-associated (FHA) domain-containing protein 824602 At3g54350 9.1 9.4
 6.3
 21.9
 2.9
 2.9
 1.7
 2.3
 1.9
 6.1
 0.8
0.3
 1.1
-0.5
 1.0
0.6
 2.1
2.0
 4.2
 3.3
1.7
 2.7
1.9
2 AT1G11060 WAPL (Wings apart-like protein regulation of heterochromatin) protein 837647 At1g11060 7.8 7.6
 5.9
 244.2
 3.5
 2.0
 -0.7
 2.6
 2.4
 5.7
 3.3
2.9
 3.3
2.0
 3.0
2.5
 1.3
0.7
 4.2
 1.8
 4.7
3 AT2G17410 ARID/BRIGHT DNA-binding domain-containing protein 816247 At2g17410 7.8 7.6
 6.0
 386.7
 2.1
 1.9
 2.1
 2.6
 0.8
 4.8






4 SPY Tetratricopeptide repeat (TPR)-like superfamily protein 820327 At3g11540 7.2 6.7
 5.8
 81.5
 5.1
 3.4
 1.7
 1.2
 0.2
 2.6
 4.4
4.2
 3.3
2.1
 3.2
1.4
 3.2
1.2
 3.4
 5.3
 0.8
5 ADA2A ADA2 2A 819965 At3g07740 7.1 6.2
 6.1
 49.8
 2.8
 3.2
 0.2
 3.1
 1.0
 1.8
 2.6
2.6
 2.9
1.8
 1.2
-0.2
 1.3
1.3
 1.7
1.6
 1.5
-1.5
 3.2
6 TPR2 TOPLESS-related 2 820936 At3g16830 7.0 6.5
 5.5
 731.4
 4.2
 0.5
 0.9
 2.1
 0.4
 4.2
 3.5
3.3
 2.6
1.4
 1.5
0.6
 -0.3
-0.5
 4.0
3.7
 3.5
 2.6
7 MET18 ARM repeat superfamily protein 834864 At5g48120 6.9 6.2
 5.8
 559.7
 1.6
 1.7
 2.3
 1.9
 2.2
 4.4
 1.7
1.0
 3.2
1.7
 3.5
 1.7
 2.0
1.6
 -1.1
 3.3
8 NRPB2 DNA-directed RNA polymerase family protein 828259 At4g21710 6.7 8.1
 3.5
 30.3
 3.3
 2.3
 2.0
 2.4
 1.0
 5.2
 2.6
2.3
 4.2
1.7
 3.1
 0.6
 5.6
 4.4
0.1
 3.4
9 AT5G03450 Transducin/WD40 repeat-like superfamily protein 831835 At5g03450 6.7 7.7
 3.9
 534.5
 1.8
 1.7
 -0.1
 1.7
 -1.1
 2.0
 1.7
 1.7
 0.9
0.2
 0.2
-0.0
 1.6
 1.3
 0.5
-0.8
10 AT1G27595 symplekin 839651 At1g27595 6.7 7.6
 4.0
 1815.1
 2.5
 0.9
 0.4
 1.3
 0.5
 7.2
 2.9
2.3
 4.3
4.2
 2.2
 0.6
 3.9
 4.0
 3.2
11 JMJ14 JUMONJI 14 827788 At4g20400 6.6 5.6
 5.9
 394.5
 4.5
 2.2
 0.6
 2.7
 1.8
 1.9
 2.1
0.4
 2.3
0.5
 1.4
1.2
 1.2
0.7
 2.6
 1.2
 2.3
12 SUS2 Pre-mRNA-processing-splicing factor 844347 At1g80070 6.6 5.9
 5.5
 85.6
 4.3
 1.9
 2.4
 2.0
 -0.2
 7.1
 4.2
2.9
 6.3
5.5
 5.4
 2.6
 4.2
3.5
 3.6
 3.3
2.9
13 SYN4 sister chromatid cohesion 1 protein 4 831487 At5g16270 6.6 6.3
 5.1
 1.4
 4.4
 4.2
 2.8
 4.0
 1.4
 4.7
 3.6
3.5
 4.9
4.9
 2.4
1.8
 0.9
-0.1
 2.2
 3.7
 6.1
14 GTE4 global transcription factor group E4 837133 At1g06230 6.4 7.1
 4.0
 126.0
 3.0
 1.7
 1.3
 1.7
 0.0
 4.9
 3.4
3.3
 3.6
3.1
 2.0
1.6
 1.2
0.6
 2.5
2.2
 2.5
2.4
 3.5
2.3
15 EMB2763 ribonuclease II family protein 816257 At2g17510 6.3 6.9
 4.1
 3016.4
 2.5
 0.0
 0.8
 1.6
 -1.2
 5.1
 3.8
2.7
 3.7
2.3
 3.4
 2.1
 3.1
 3.5
 4.0
16 EMB2765 P-loop containing nucleoside triphosphate hydrolases superfamily protein 818459 At2g38770 6.3 6.1
 4.8
 1590.1
 1.8
 1.2
 0.9
 1.2
 0.4
 5.7
 4.7
3.8
 4.9
4.7
 4.3
 2.2
 3.7
 3.9
 3.0
17 LUG transcriptional corepressor LEUNIG 829390 At4g32551 6.3 6.0
 4.8
 473.8
 2.6
 1.1
 1.1
 1.2
 0.6
 4.3
 5.1
3.4
 4.8
4.7
 1.4
0.0
 0.1
-0.1
 4.9
3.4
 2.2
 2.9
-0.3
18 XI-I myosin 829456 At4g33200 6.2 5.8
 5.0
 629.5
 2.8
 0.7
 0.7
 2.4
 -0.4
 5.3
 2.5
2.0
 2.8
2.5
 1.0
 1.7
 3.1
2.1
 3.6
 2.8
1.9
19 DDB1A damaged DNA binding protein 1A 825890 At4g05420 6.2 7.0
 3.7
 99.0
 3.0
 1.3
 1.5
 3.0
 0.5
 5.6
 2.8
 3.3
 1.8
 2.6
 4.0
 5.0
 1.4
20 ELF6 Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein 830303 At5g04240 6.2 5.3
 5.4
 288.9
 3.7
 2.2
 1.1
 0.9
 0.5
 3.5
 2.8
2.4
 4.1
2.4
 2.4
1.1
 4.1
2.0
 3.4
 3.3
 2.8
21 AT5G64270 splicing factor 836548 At5g64270 6.1 5.8
 4.7
 18.3
 5.4
 3.5
 1.1
 2.5
 0.3
 4.9
 2.6
1.1
 3.0
2.7
 5.1
2.9
 3.3
2.6
 2.8
 3.6
 4.0
22 HVT1 helicase in vascular tissue and tapetum 817631 At2g30800 6.1 7.5
 3.1
 51.6
 2.7
 2.6
 1.3
 2.0
 0.8
 5.3
 1.9
1.1
 3.1
2.7
 2.7
 0.8
 4.0
 1.7
 1.8
23 CCT RNA polymerase II transcription mediator 827954 At4g00450 6.1 5.5
 5.0
 31.3
 2.7
 2.1
 1.0
 3.2
 0.4
 6.1
 4.7
4.7
 4.4
4.1
 2.3
1.9
 2.5
1.2
 4.2
2.6
 3.0
 4.7
1.5
24 CUL4 cullin4 834663 At5g46210 6.1 6.5
 4.0
 167.9
 4.2
 1.3
 1.2
 2.5
 1.2
 3.4
 4.8
2.1
 4.7
3.0
 3.2
1.8
 3.0
2.5
 4.6
 8.8
3.3
 3.7
25 IYO RPAP1-like, carboxy-terminal protein 830001 At4g38440 6.1 5.9
 4.6
 101.0
 3.4
 3.2
 0.6
 2.0
 -0.2
 3.8
 3.9
2.1
 3.0
2.3
 2.1
 2.0
 5.0
2.7
 4.3
 0.9
26 NUP155 nucleoporin 155 838050 At1g14850 6.0 5.4
 5.1
 1961.2
 2.2
 1.0
 1.5
 1.4
 -1.2
 5.5
 3.2
2.7
 2.6
2.3
 3.0
 1.6
 2.6
 2.6
 3.5
27 AT5G42950 GYF domain-containing protein 834307 At5g42950 5.9 6.1
 4.2
 79.9
 3.4
 1.6
 2.2
 2.3
 0.2
 3.9
 4.3
4.0
 5.7
5.5
 3.9
 1.9
 3.4
 3.2
 3.6
28 AT5G07970 dentin sialophosphoprotein-like protein 830691 At5g07970 5.9 6.1






6.0
 4.7
4.3
 5.0
4.5
 3.0
2.8
 1.9
1.8
 3.9
3.7
 4.0
3.5
 4.0
1.5
29 AT4G36080 phosphotransferases/inositol or phosphatidylinositol kinase 829764 At4g36080 5.9 5.8






6.4
 4.0
3.1
 4.8
4.4
 4.9
2.7
 2.1
1.3
 3.9
 2.9
 1.5
30 AT1G29370 RNA polymerase II degradation factor-like protein (DUF1296) 839812 At1g29370 5.8 6.0






5.0
 2.7
2.6
 4.6
3.6
 2.6
2.1
 2.4
-0.0
 3.4
 1.4
0.3
 2.8
1.3
31 KAK HECT ubiquitin protein ligase family protein KAK 830017 At4g38600 5.8 5.9
 4.1
 66.9
 2.3
 1.4
 2.4
 4.0
 1.0
 5.8
 3.5
2.5
 3.6
3.6
 4.4
4.0
 2.0
1.4
 3.9
 3.2
2.6
 1.2
32 FRS3 FAR1-related sequence 3 817253 At2g27110 5.8 5.8
 4.1
 545.0
 3.3
 1.3
 0.2
 1.6
 1.0
 3.3
 3.8
3.5
 3.8
3.8
 2.1
1.8
 2.8
2.3
 3.2
3.1
 5.7
3.9
 3.9
1.8
33 AT1G29350 RNA polymerase II degradation factor-like protein (DUF1296) 839809 At1g29350 5.7 6.0






5.7
 2.7
2.6
 4.6
3.6
 2.6
2.1
 2.4
-0.0
 3.4
 1.4
0.3
 2.8
1.3
34 TOR target of rapamycin 841427 At1g50030 5.7 6.5
 3.3
 588.7
 3.1
 1.7
 0.6
 1.7
 -1.1
 4.8
 3.7
3.5
 3.1
2.9
 3.8
2.3
 0.9
0.1
 3.5
 3.5
 2.3
35 AT1G33680 KH domain-containing protein 840259 At1g33680 5.7 5.7
 4.1
 577.5
 1.8
 1.8
 2.7
 1.1
 -0.8
 4.7
 1.7
1.2
 2.2
2.1
 2.5
2.2
 4.5
1.5
 3.7
2.6
 1.5
 2.5
36 AT3G24880 Helicase/SANT-associated, DNA binding protein 822086 At3g24880 5.6 5.8






4.9
 4.1
3.8
 5.2
4.9
 2.2
1.1
 0.9
0.9
 4.3
0.5
 4.0
3.2
 5.4
2.9
37 AT3G26560 ATP-dependent RNA helicase 822264 At3g26560 5.6 4.6
 5.0
 347.7
 4.6
 1.0
 1.3
 2.3
 2.8
 3.2
 4.0
3.1
 3.4
2.8
 1.6
0.8
 0.5
-0.6
 2.2
0.9
 3.2
1.8
 2.4
2.4
38 AT3G11960 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 820369 At3g11960 5.6 5.4
 4.3
 36.1
 4.0
 2.5
 1.2
 2.7
 1.5
 5.9
 3.5
2.1
 5.0
5.0
 2.8
 2.0
 4.4
 2.1
 3.0
39 AT5G13950 nuclear factor kappa-B-binding protein 831243 At5g13950 5.6 5.7
 3.9
 381.5
 0.4
 1.9
 0.7
 1.0
 -0.4
 3.6
 1.5
0.9
 2.4
2.1
 1.7
1.1
 3.2
1.2
 3.6
2.1
 3.0
 2.6
40 AT1G26370 RNA helicase family protein 839179 At1g26370 5.5 6.4
 3.2
 1201.1
 2.1
 1.7
 0.4
 2.0
 1.4
 3.3
 3.2
1.5
 4.4
2.4
 4.2
 1.8
 2.8
0.5
 1.9
 0.3
41 AT1G03910 cactus-binding carboxy-terminal, cactin 839371 At1g03910 5.5 4.3
 5.2
 58.7
 4.1
 2.9
 0.9
 2.1
 1.2
 0.0
 1.0
-0.1
 2.4
0.9
 1.9
 1.0
 4.9
2.9
 1.1
 2.9
42 AT1G02080 transcription regulator 839244 At1g02080 5.5 4.9
 4.6
 40.1
 2.9
 2.4
 2.8
 2.6
 0.2
 6.5
 4.9
3.5
 4.9
4.7
 3.7
1.7
 0.9
0.3
 4.6
 3.7
 3.2
0.7
43 AT1G27750 nucleic acid binding protein 839668 At1g27750 5.5 5.9






5.1
 4.0
3.0
 4.1
3.0
 2.0
 0.9
 4.2
 3.6
 1.1
44 AT3G09100 mRNA capping enzyme family protein 820064 At3g09100 5.5 5.1
 4.4
 73.9
 3.9
 2.4
 2.2
 2.1
 1.0
 2.7
 3.2
2.5
 2.6
2.3
 3.0
2.2
 2.1
0.7
 3.7
2.7
 4.3
2.4
 2.0
1.7
45 MBD9 methyl-CPG-binding domain 9 821132 At3g01460 5.5 5.5
 4.0
 228.5
 3.1
 1.6
 1.9
 1.8
 1.8
 4.7
 3.0
3.0
 3.9
3.7
 4.4
 2.1
 3.7
 3.0
 2.3
46 ATCHR12 SNF2/Brahma-type chromatin-remodeling protein CHR12 819772 At3g06010 5.4 5.7
 3.7
 35.7
 2.9
 2.0
 2.5
 2.2
 1.0
 2.3
 1.6
1.4
 1.8
1.3
 0.8
0.4
 0.6
-0.9
 3.0
1.6
 2.1
 2.5
47 XRN3 5'-3' exoribonuclease 3 843900 At1g75660 5.4 6.0
 3.4
 480.0
 0.7
 0.9
 1.4
 1.8
 0.1
 5.3
 1.8
1.0
 2.5
2.1
 3.4
1.4
 0.7
-0.5
 2.6
-0.1
 3.2
1.2
 2.5
48 AT3G24870 Helicase/SANT-associated, DNA binding protein 822085 At3g24870 5.3 5.5






4.8
 4.1
3.8
 5.2
4.9
 2.2
1.1
 0.9
0.9
 4.3
0.5
 4.0
3.2
 5.4
2.9
49 AT5G23610 DYAD protein 832427 At5g23610 5.3 6.5
 2.7
 156.3
 1.4
 2.6
 0.4
 1.5
 0.8
 2.2
 3.1
3.0
 2.8
2.2
 1.8
1.2
 0.4
0.4
 1.1
0.1
-0.7
50 AT5G58410 HEAT/U-box domain-containing protein 835954 At5g58410 5.3 5.4
 3.7
 379.3
 3.0
 2.3
 0.2
 2.1
 -1.6
 5.9
 2.4
 4.8
 3.5
 2.7
 6.2
 4.4
 2.7
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