cis; ATGCATG

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
  CATGCATG    RYREPEATVFLEB4 [ref] [ref] [ref] [ref] [ref] [ref] [ref]
TCCATGCATGCAC RYREPEAT4 [ref] [ref] [ref] [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of ATGCATG

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of ATGCATG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.47At4g31060AP2 domain-containing transcription factor, putative AP2-EREBP
0.42At3g26790transcriptional regulator (FUSCA3) ((FUS3)) ABI3VP1
0.42At1g43640F-box family protein / tubby family protein TUB
0.42At1g09540myb family transcription factor (MYB61) ((MYB61)) MYB
-0.42At3g02380zinc finger protein CONSTANS-LIKE 2 (COL2) ((CO, COL2)) C2C2-CO-like
0.41At5g07210two-component responsive regulator family protein / response regulator family protein ((ARR21)) ARR-B
0.40At3g13540myb family transcription factor ((ATMYB5)) MYB
0.40At1g21970CCAAT-box binding transcription factor (LEC1) ((LEC1)) CCAAT-HAP3

link to other 304 cis elements in ATTED

similar seq.
←ATGCATG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CATGCAT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
ATGCATG1.000.0856
TGCATGC0.790.0849
GCATGCA0.740.0650
TGCATGT0.690.0760
CTCATGC0.650.0677
CATGCAT0.630.0743