cis; GCATGCA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
TCCATGCATGCAC RYREPEAT4 [ref] [ref] [ref] [ref] [ref]
      CATGCA  RYREPEATBNNAPA [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GCATGCA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GCATGCA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.47At5g07500zinc finger (CCCH-type) family protein ((PEI1)) C2H2
0.46At3g24650abscisic acid-insensitive protein 3 (ABI3) ((ABI3)) ABI3VP1
0.46At5g55970zinc finger (C3HC4-type RING finger) family protein C3H
0.45At3g15500no apical meristem (NAM) family protein (NAC3) ((ATNAC3)) NAC
0.45At3g26790transcriptional regulator (FUSCA3) ((FUS3)) ABI3VP1
0.45At5g39610no apical meristem (NAM) family protein NAC
0.44At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.43At3g44460basic leucine zipper transcription factor (BZIP67) ((DPBF2)) bZIP
0.43At2g24430no apical meristem (NAM) family protein NAC
0.42At2g24260basic helix-loop-helix (bHLH) family protein BHLH
0.42At3g02940myb family transcription factor (MYB107) ((MYB107)) MYB
0.42At5g18270no apical meristem (NAM) family protein NAC
0.42At3g15510no apical meristem (NAM) family protein (NAC2) ((ATNAC2)) NAC
0.41At1g75490DRE-binding transcription factor, putative AP2-EREBP
0.40At2g43060expressed protein BHLH

link to other 304 cis elements in ATTED

similar seq.
←GCATGCA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TGCATGC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GCATGCA1.000.0650
TGCATGC0.860.0849
ATGCATG0.740.0856
CATGCAT0.680.0743
TTGCATG0.600.0674