cis; CCATGCA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
       TCCATGCAT              SPHCOREZMC1 [ref] [ref]
     CGTCCATGCAT              SPHZMC1 [ref] [ref]
       TCCATGCATGCAC          RYREPEAT4 [ref] [ref] [ref] [ref] [ref]
CGTGTCGTCCATGCAT              CGTGTSPHZMC1 [ref]
 TCCATAGCCATGCAWRCTGMAGAATGTC LEGUMINBOXLEGA5 [ref] [ref]
         CATGCA               RYREPEATBNNAPA [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CCATGCA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CCATGCA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.51At5g07500zinc finger (CCCH-type) family protein ((PEI1)) C2H2
0.50At1g21970CCAAT-box binding transcription factor (LEC1) ((LEC1)) CCAAT-HAP3
0.50At3g24650abscisic acid-insensitive protein 3 (ABI3) ((ABI3)) ABI3VP1
0.47At3g44460basic leucine zipper transcription factor (BZIP67) ((DPBF2)) bZIP
0.46At3g26790transcriptional regulator (FUSCA3) ((FUS3)) ABI3VP1
0.45At1g75490DRE-binding transcription factor, putative AP2-EREBP
0.45At5g47670CCAAT-box binding transcription factor family protein / leafy cotyledon 1-related (L1L) CCAAT-HAP3
0.44At3g13540myb family transcription factor ((ATMYB5)) MYB
-0.43At2g01760two-component responsive regulator family protein / response regulator family protein ((ARR14)) ARR-B
-0.43At2g42200squamosa promoter-binding protein-like 9 (SPL9) SBP
0.42At5g10120ethylene insensitive 3 family protein EIL
0.42At5g07210two-component responsive regulator family protein / response regulator family protein ((ARR21)) ARR-B
0.42At1g72220zinc finger (C3HC4-type RING finger) family protein C3H
0.41At3g15510no apical meristem (NAM) family protein (NAC2) ((ATNAC2)) NAC
0.41At2g41070basic leucine zipper transcription factor (BZIP12) ((DPBF4, EEL)) bZIP

link to other 304 cis elements in ATTED

similar seq.
←CCATGCA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TGCATGG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CCATGCA1.000.0862
CATGCAA0.810.0986
GCCATGC0.740.0717
TGCATGT0.690.0760
CTCATGC0.670.0677
CATGCAT0.620.0743
TGCATGC0.600.0849