cis; CATGCTC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CATGCTC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CATGCTC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.69At2g38470WRKY family transcription factor ((WRKY33)) WRKY
0.67At1g80840WRKY family transcription factor ((WRKY40)) WRKY
0.65At4g17490ethylene-responsive element-binding protein, putative ((ATERF6, ERF-6-6)) AP2-EREBP
0.64At4g23810WRKY family transcription factor ((WRKY29, WRKY53)) WRKY
0.62At1g27730zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc finger protein (STZ) ((ZAT10)) C2H2
0.61At5g51190AP2 domain-containing transcription factor, putative AP2-EREBP
0.61At5g47230ethylene-responsive element-binding factor 5 (ERF5) ((ATERF5)) AP2-EREBP
0.60At1g18570myb family transcription factor (MYB51) ((MYB51)) MYB
0.60At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
0.57At3g16720zinc finger (C3HC4-type RING finger) family protein ((ATL2)) C3H
0.57At3g46600scarecrow transcription factor family protein GRAS
0.57At3g52800zinc finger (AN1-like) family protein C2H2
0.56At5g61600ethylene-responsive element-binding family protein AP2-EREBP
0.55At4g17500ethylene-responsive element-binding protein 1 (ERF1) / EREBP-2 protein ((ATERF-1)) AP2-EREBP
0.55At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP

link to other 304 cis elements in ATTED

similar seq.
←CATGCTC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GAGCATG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CATGCTC1.000.0844
ACGCGCT0.700.09111
ACCGCGT0.690.1098
TCTTTCC0.680.0638
CTTTCCT0.680.0647
CGCGTTC0.670.06177
CCTCTCT0.660.0657
CAGCATG0.660.079
CATCCCG0.650.07106
GCGTATG0.640.0653