cis; GCGAAGG


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GCGAAGG

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GCGAAGG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
-0.48At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
-0.46At3g52800zinc finger (AN1-like) family protein C2H2
-0.45At5g13820telomeric DNA-binding protein 1 (TBP1) ((HPPBF-1, TBP1)) MYB-related
-0.44At4g37790homeobox-leucine zipper protein 22 (HAT22) / HD-ZIP protein 22 ((HAT22)) Homeobox
-0.44At1g62300WRKY family transcription factor ((WRKY6)) WRKY
-0.44At3g16720zinc finger (C3HC4-type RING finger) family protein ((ATL2)) C3H
-0.43At2g38470WRKY family transcription factor ((WRKY33)) WRKY
-0.43At1g69490no apical meristem (NAM) family protein ((NAP)) NAC
-0.43At1g42990bZIP transcription factor family protein bZIP
-0.43At3g15210ethylene-responsive element-binding factor 4 (ERF4) ((ATERF4, RAP2.5)) AP2-EREBP
-0.43At1g77450no apical meristem (NAM) family protein NAC
-0.42At3g04060no apical meristem (NAM) family protein NAC
-0.42At3g49530no apical meristem (NAM) family protein NAC
-0.42At3g04070no apical meristem (NAM) family protein NAC
-0.42At5g63790no apical meristem (NAM) family protein NAC

link to other 304 cis elements in ATTED

similar seq.
GCGAAGG
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CCTTCGC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GCGAAGG1.000.0979
CTCTAGA0.820.1083
GCTGTAC0.820.0717
CCAAGCG0.810.0670
CCCTGGG0.810.06113
GCCACGG0.790.06150
CTCCAGA0.770.0754
TTCTGGA0.760.0782
TCTAGAA0.760.1580
CTTCTAG0.760.1090