ATTED cis element page for TCCAGAA

cis; TCCAGAA

Correspondence to reported cis elements^* on sequence level (perfect match)

reported seq	reported name	reference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions

Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC^*) related to presence of TCCAGAA

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GO ID	term	-Log(p)	number of {A; genes in a GO}	numver of {B; genes with this heptamer}	{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of TCCAGAA.

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correl	TF	function ((alias))^*	TF family (link to AGRIS)
0.64	At2g26150	heat shock transcription factor family protein ((ATHSFA2))	HSF
0.63	At5g04410	no apical meristem (NAM) family protein ((NAC2))	NAC
0.58	At4g11660	heat shock factor protein 7 (HSF7) / heat shock transcription factor 7 (HSTF7) ((AT-HSFB2B))	HSF
0.58	At1g26800	zinc finger (C3HC4-type RING finger) family protein	C3H
0.58	At5g05410	DRE-binding protein (DREB2A) ((DREB2A))	AP2-EREBP
0.57	At1g14200	zinc finger (C3HC4-type RING finger) family protein	C3H
0.53	At4g36990	heat shock factor protein 4 (HSF4) / heat shock transcription factor 4 (HSTF4) ((AT-HSFB1, ATHSF4, HSF4))	HSF
0.49	At3g10800	bZIP transcription factor family protein	bZIP
0.48	At5g62020	heat shock factor protein, putative (HSF6) / heat shock transcription factor, putative (HTSF6) ((AT-HSFB2A))	HSF
0.47	At1g32870	no apical meristem (NAM) family protein	NAC
0.47	At3g63350	heat shock transcription factor family protein ((AT-HSFA7B))	HSF
0.46	At4g00940	Dof-type zinc finger domain-containing protein	C2C2-Dof
0.45	At2g40950	bZIP transcription factor family protein	bZIP
0.45	At1g01720	no apical meristem (NAM) family protein ((ATAF1))	NAC
0.45	At1g56170	transcription factor, putative ((HAP5B))	CCAAT-HAP5

link to other 304 cis elements in ATTED

similar seq.
←	T	C	C	A	G	A	A	→
A	A	A	A	A	A	A	A	A
C	C	C	C	C	C	C	C	C
G	G	G	G	G	G	G	G	G
T	T	T	T	T	T	T	T	T

complimentary; TTCTGGA

cis with similar CEG profile
similar cis	CEG correl	maxCEG	best position
TCCAGAA	1.00	0.07	104
TCTAGAA	0.85	0.15	80
TTCTAGA	0.83	0.11	88
CCAGAAC	0.81	0.06	114
CTTCTAG	0.80	0.10	90
CCCTGGG	0.79	0.06	113
CTCCAGA	0.78	0.07	54
ACTCCTG	0.77	0.06	56
GCCACGG	0.77	0.06	150
GCTGTAC	0.76	0.07	17