cis; TGTCGGC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of TGTCGGC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of TGTCGGC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.53At1g76580SPL1-Related3 protein (SPL1R3) SBP
0.51At2g23340AP2 domain-containing transcription factor, putative AP2-EREBP
0.48At3g05800expressed protein BHLH
0.45At1g64380AP2 domain-containing transcription factor, putative AP2-EREBP
0.42At4g32800AP2 domain-containing transcription factor TINY, putative AP2-EREBP
0.42At1g08900sugar transporter-related C2H2

link to other 304 cis elements in ATTED

similar seq.
←TGTCGGC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GCCGACA
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
TGTCGGC1.000.06163
GTCGGCA0.750.07186
ATGTCGG0.690.07111
ACCGACA0.640.0781
ACCGTGT0.640.07144
TGCCGAC0.630.0830
GCCGACA0.630.08121
GTCGACA0.620.08171
CCGACAT0.610.0788