ATTED-II : GeneID search result

[←][→] ath AT1G62930 Gene

functional annotation

Function

Tetratricopeptide repeat (TPR)-like superfamily protein

GO BP

GO:0006397 [list] [network] mRNA processing

(376 genes)

IMP

GO CC

GO:0005739 [list] [network] mitochondrion	(4405 genes)	IDA
GO:0009507 [list] [network] chloroplast	(5095 genes)	IEA ISM

GO MF

KEGG

Protein

NP_176481.2

BLAST

NP_176481.2

Orthologous

[Ortholog page] AT3G16710 (ath) AT3G22470 (ath) AT4G26800 (ath) AT5G16640 (ath) AT5G41170 (ath) AT1G06580 (ath) AT1G12300 (ath) AT1G12620 (ath) RPF1 (ath) AT1G62590 (ath) RPF2 (ath) AT1G62680 (ath) NG1 (ath) AT1G62910 (ath) AT1G63070 (ath) AT1G63080 (ath) AT1G63130 (ath) AT1G63150 (ath) AT1G63330 (ath) AT1G63400 (ath) AT1G64580 (ath) AT1G12775 (ath) LOC7455414 (ppo) LOC7465949 (ppo) LOC7497413 (ppo) AT1G62914 (ath) AT1G64583 (ath) LOC11409172 (mtr) LOC11411617 (mtr) LOC11411874 (mtr) LOC11413784 (mtr) LOC11414076 (mtr) LOC11416151 (mtr) LOC11417300 (mtr) LOC11419137 (mtr) LOC11419300 (mtr) LOC11419320 (mtr) LOC11420208 (mtr) LOC11422222 (mtr) LOC11430397 (mtr) LOC11436467 (mtr) LOC11439118 (mtr) LOC25479607 (mtr) LOC25479611 (mtr) LOC25479678 (mtr) LOC25480002 (mtr) LOC25480323 (mtr) LOC25480558 (mtr) LOC25480855 (mtr) LOC25481060 (mtr) LOC25481299 (mtr) LOC25481803 (mtr) LOC25482431 (mtr) LOC25483258 (mtr) LOC25496585 (mtr) LOC25496655 (mtr) LOC25496724 (mtr) LOC25496733 (mtr) LOC25496736 (mtr) LOC25496740 (mtr) LOC25496751 (mtr) LOC25496764 (mtr) LOC25496765 (mtr) LOC25497066 (mtr) LOC25497290 (mtr) LOC25497361 (mtr) LOC100243276 (vvi) LOC100244236 (vvi) LOC100246659 (vvi) LOC100252034 (vvi) LOC100253509 (vvi) LOC100255400 (vvi) LOC100256928 (vvi) LOC100258882 (vvi) LOC100265584 (vvi) LOC100777512 (gma) LOC100777919 (gma) LOC100778062 (gma) LOC100778420 (gma) LOC100781818 (gma) LOC100789435 (gma) LOC100793769 (gma) LOC100795807 (gma) LOC100796249 (gma) LOC100807278 (gma) LOC100811076 (gma) LOC100811865 (gma) LOC100812093 (gma) LOC100813712 (gma) LOC100818504 (gma) LOC100852554 (vvi) LOC101244875 (sly) LOC101248205 (sly) LOC101256290 (sly) LOC101263217 (sly) LOC101266330 (sly) LOC102663208 (gma) LOC102669831 (gma) LOC103833524 (bra) LOC103836144 (bra) LOC103836146 (bra) LOC103836151 (bra) LOC103838039 (bra) LOC103838041 (bra) LOC103838174 (bra) LOC103838255 (bra) LOC103838258 (bra) LOC103838282 (bra) LOC103838376 (bra) LOC103839829 (bra) LOC103843088 (bra) LOC103843103 (bra) LOC103843107 (bra) LOC103843127 (bra) LOC103843546 (bra) LOC103846313 (bra) LOC103864061 (bra) LOC103866658 (bra) LOC103871206 (bra) LOC104879278 (vvi) LOC106796589 (gma) LOC112417994 (mtr) LOC112422668 (mtr) LOC112999808 (gma)

Subcellular
localization
wolf

chlo 4, chlo_mito 4, mito 3, nucl 1, extr 1, E.R. 1

(predict for NP_176481.2)

Subcellular
localization
TargetP

mito 5

(predict for NP_176481.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with RPF3 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.7	AT1G63130	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	842617
4.7	AT5G49000	Galactose oxidase/kelch repeat superfamily protein	[detail]	834959
4.3	AT1G63080	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	842611

Coexpressed
gene list

[Coexpressed gene list for RPF3]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261095_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261095_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261095_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	842594
Refseq ID (protein)	NP_176481.2

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