[←][→] ath   AT1G79090 Gene
functional annotation
Function   topoisomerase II-associated protein  
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (7 genes)  IBA IMP  
GO:0033962 [list] [network] cytoplasmic mRNA processing body assembly  (11 genes)  IBA  
GO:0045087 [list] [network] innate immune response  (322 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0000932 [list] [network] P-body  (56 genes)  IBA IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_001320315.1  NP_565199.1  NP_849904.1 
BLAST NP_001320315.1  NP_565199.1  NP_849904.1 
Orthologous [Ortholog page] AT3G22270 (ath)  AT4G14990 (ath)  LOC4325594 (osa)  LOC4329480 (osa)  LOC7454988 (ppo)  LOC7480371 (ppo)  LOC7495641 (ppo)  LOC25487016 (mtr)  LOC25487017 (mtr)  LOC100255521 (vvi)  LOC100267869 (vvi)  LOC100272651 (zma)  LOC100779096 (gma)  LOC100787112 (gma)  LOC100787648 (gma)  LOC100805313 (gma)  LOC100812450 (gma)  LOC101253667 (sly)  LOC101257075 (sly)  LOC101260608 (sly)  LOC103630586 (zma)  LOC103830497 (bra)  LOC103832387 (bra)  LOC103834665 (bra)  LOC103869095 (bra)  LOC103871463 (bra)  LOC103872452 (bra) 
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_001320315.1)
nucl 8,  cyto 1  (predict for NP_565199.1)
nucl 8,  cyto 1  (predict for NP_849904.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001320315.1)
other 8  (predict for NP_565199.1)
other 8  (predict for NP_849904.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath03013 RNA transport 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT1G79090 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 BSL3 BRI1 suppressor 1 (BSU1)-like 3 [detail] 817263
8.0 SMG7 Telomerase activating protein Est1 [detail] 832060
7.6 VCS Transducin/WD40 repeat-like superfamily protein [detail] 820530
7.3 TRH1 Potassium transporter family protein [detail] 828464
6.8 RH8 RNAhelicase-like 8 [detail] 828042
6.5 AT1G80000 CASC3/Barentsz eIF4AIII binding protein [detail] 844340
6.5 AT1G51350 ARM repeat superfamily protein [detail] 841558
5.0 SPL7 squamosa promoter binding protein-like 7 [detail] 832001
Coexpressed
gene list		 [Coexpressed gene list for AT1G79090]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264141_at
264141_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264141_at
264141_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264141_at
264141_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844250      
Refseq ID (protein) NP_001320315.1 
NP_565199.1 
NP_849904.1 


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