ATTED-II : GeneID search result

[←][→] ath At1g06580 Gene

functional annotation

Function

Pentatricopeptide repeat (PPR) superfamily protein

GO BP

GO:0042742 [list] [network] defense response to bacterium

(980 genes)

IMP

GO CC

GO:0005739 [list] [network] mitochondrion

(4228 genes)

ISM

GO MF

KEGG

Protein

NP_001320555.1 NP_001320556.1 NP_172145.1

BLAST

NP_001320555.1 NP_001320556.1 NP_172145.1

Orthologous

[Ortholog page] AT3G16710 (ath) AT3G22470 (ath) AT4G26800 (ath) AT5G16640 (ath) AT5G41170 (ath) AT1G12300 (ath) AT1G12620 (ath) RPF1 (ath) AT1G62590 (ath) RPF2 (ath) AT1G62680 (ath) NG1 (ath) AT1G62910 (ath) RPF3 (ath) AT1G63070 (ath) AT1G63080 (ath) AT1G63130 (ath) AT1G63150 (ath) AT1G63400 (ath) AT1G64580 (ath) AT1G12775 (ath) LOC7455414 (ppo) LOC7459907 (ppo) LOC7465949 (ppo) LOC7473913 (ppo) LOC7494521 (ppo) LOC7497413 (ppo) AT1G62914 (ath) AT1G64583 (ath) LOC11409172 (mtr) LOC11411874 (mtr) LOC11413784 (mtr) LOC11414076 (mtr) LOC11416151 (mtr) LOC11417289 (mtr) LOC11418245 (mtr) LOC11419137 (mtr) LOC11419320 (mtr) LOC11420208 (mtr) LOC11422222 (mtr) LOC11422820 (mtr) LOC11430397 (mtr) LOC11436467 (mtr) LOC11439118 (mtr) LOC18097550 (ppo) LOC18098827 (ppo) LOC18098888 (ppo) LOC18098897 (ppo) LOC18098899 (ppo) LOC18098911 (ppo) LOC18098937 (ppo) LOC18098938 (ppo) LOC18098941 (ppo) LOC18099092 (ppo) LOC18100671 (ppo) LOC18100718 (ppo) LOC18104626 (ppo) LOC18104675 (ppo) LOC18106079 (ppo) LOC18106937 (ppo) LOC18107488 (ppo) LOC18109035 (ppo) LOC18110965 (ppo) LOC18110967 (ppo) LOC25479607 (mtr) LOC25479611 (mtr) LOC25479678 (mtr) LOC25480002 (mtr) LOC25480032 (mtr) LOC25480855 (mtr) LOC25481060 (mtr) LOC25481299 (mtr) LOC25481305 (mtr) LOC25482431 (mtr) LOC25483258 (mtr) LOC25496655 (mtr) LOC25496724 (mtr) LOC25496736 (mtr) LOC25496764 (mtr) LOC25497066 (mtr) LOC25497290 (mtr) LOC25497361 (mtr) AT1G12615 (ath) LOC100777512 (gma) LOC100777919 (gma) LOC100778062 (gma) LOC100778420 (gma) LOC100781818 (gma) LOC100782898 (gma) LOC100786237 (gma) LOC100786599 (gma) LOC100789435 (gma) LOC100793769 (gma) LOC100794739 (gma) LOC100796249 (gma) LOC100807278 (gma) LOC100808007 (gma) LOC100811076 (gma) LOC100811865 (gma) LOC100812093 (gma) LOC100812458 (gma) LOC100812993 (gma) LOC100813712 (gma) LOC100814966 (gma) LOC100818504 (gma) LOC100818857 (gma) LOC100819931 (gma) LOC100820602 (gma) LOC101244875 (sly) LOC101248205 (sly) LOC101256290 (sly) LOC101263217 (sly) LOC101266330 (sly) LOC102663208 (gma) LOC102663951 (gma) LOC102668851 (gma) LOC102669963 (gma) LOC103833524 (bra) LOC103836144 (bra) LOC103836146 (bra) LOC103836151 (bra) LOC103838039 (bra) LOC103838041 (bra) LOC103838174 (bra) LOC103838255 (bra) LOC103838258 (bra) LOC103838282 (bra) LOC103838333 (bra) LOC103838376 (bra) LOC103838525 (bra) LOC103839829 (bra) LOC103843088 (bra) LOC103843103 (bra) LOC103843107 (bra) LOC103843127 (bra) LOC103843546 (bra) LOC103846313 (bra) LOC103864061 (bra) LOC103866658 (bra) LOC103871206 (bra) LOC106794624 (gma) LOC106796589 (gma) LOC106799227 (gma) LOC112327322 (ppo) LOC112327523 (ppo) LOC112327640 (ppo) LOC112417994 (mtr) LOC112997677 (gma) LOC112999808 (gma) LOC120575769 (mtr) LOC120576066 (mtr) LOC120576067 (mtr) LOC120576109 (mtr) LOC120576111 (mtr) LOC120576112 (mtr) LOC120576114 (mtr) LOC120576116 (mtr) LOC120576117 (mtr) LOC120580925 (mtr) LOC121173775 (gma)

Subcellular
localization
wolf

cyto 5, cysk 1, chlo 1, plas 1, extr 1, E.R. 1, golg 1, cysk_nucl 1, golg_plas 1, E.R._plas 1	(predict for NP_001320555.1)
cyto 5, cysk 1, chlo 1, plas 1, extr 1, E.R. 1, golg 1, cysk_nucl 1, golg_plas 1, E.R._plas 1	(predict for NP_001320556.1)
chlo 4, chlo_mito 4, mito 3, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1	(predict for NP_172145.1)

Subcellular
localization
TargetP

scret 7, other 3	(predict for NP_001320555.1)
scret 7, other 3	(predict for NP_001320556.1)
mito 3	(predict for NP_172145.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT1G06580 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
7.3	AT5G16640	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	831526
6.8	SKIP4	SKP1 interacting partner 4	[detail]	825307
6.2	AT3G16710	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	820923

Coexpressed
gene list

[Coexpressed gene list for AT1G06580]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

262627_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

262627_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

262627_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	837169
Refseq ID (protein)	NP_001320555.1
	NP_001320556.1
	NP_172145.1

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