cis; AGATATT


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
  ATATT ROOTMOTIFTAPOX1 [ref]
 GATA   GATABOX [ref] [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of AGATATT

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of AGATATT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.67At1g49720ABA-responsive element-binding protein / abscisic acid responsive elements-binding factor (ABRE) ((ABF1)) bZIP
0.62At5g48250zinc finger (B-box type) family protein C2C2-CO-like
0.59At1g28050zinc finger (B-box type) family protein C2C2-CO-like
0.58At3g46640myb family transcription factor G2-like
0.58At1g67970heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5) ((AT-HSFA8)) HSF
0.56At2g47890zinc finger (B-box type) family protein C2C2-CO-like
0.56At1g08900sugar transporter-related C2H2
0.55At1g78600zinc finger (B-box type) family protein C2C2-CO-like
0.55At2g40350AP2 domain-containing transcription factor, putative (DREB2) AP2-EREBP
0.54At4g25480DRE-binding protein (DREB1A) / CRT/DRE-binding factor 3 (CBF3) ((DREB1A)) AP2-EREBP
0.54At3g07650zinc finger (B-box type) family protein C2C2-CO-like
0.53At3g05800expressed protein BHLH
-0.53At1g01060myb family transcription factor ((LHY)) MYB-related
0.53At3g11020DRE-binding protein (DREB2B) ((DREB2B)) AP2-EREBP
0.49At2g18670zinc finger (C3HC4-type RING finger) family protein C3H

link to other 304 cis elements in ATTED

similar seq.
AGATATT
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; AATATCT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
AGATATT1.000.1128
GATATTT0.970.1049
AAGATAT0.870.0750
AAATATC0.870.1477
AATATCT0.860.1480
ATATCTA0.770.0889
ATATCTT0.610.0779
AAAATAT0.600.07118