cis; AAGATAA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
  GATAA IBOXCORE
  GATA  GATABOX [ref] [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of AAGATAA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of AAGATAA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.62At1g68520zinc finger (B-box type) family protein C2C2-CO-like
0.60At2g18300basic helix-loop-helix (bHLH) family protein BHLH
0.57At1g68190zinc finger (B-box type) family protein C2C2-CO-like
0.56At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.53At1g76890trihelix DNA-binding protein / GT-2 factor (GT2) ((GT2)) Trihelix
0.53At5g61590AP2 domain-containing transcription factor family protein AP2-EREBP
0.51At2g41940zinc finger (C2H2 type) family protein ((ZFP8)) C2H2
0.51At1g19000myb family transcription factor MYB-related
0.49At5g60970TCP family transcription factor, putative TCP
0.49At2g02450no apical meristem (NAM) family protein NAC
0.49At1g34310transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related ARF
0.49At2g27050ethylene-insensitive3-like1 (EIL1) ((EIL1)) EIL
0.48At3g59060basic helix-loop-helix (bHLH) family protein ((PIL6)) BHLH
0.48At3g11110zinc finger (C3HC4-type RING finger) family protein C3H
-0.48At2g35530bZIP transcription factor family protein bZIP

link to other 304 cis elements in ATTED

similar seq.
AAGATAA
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TTATCTT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
AAGATAA1.000.0641
AGATAAG0.940.0838
TCTTATC0.940.0923
GATAAGG0.930.0739
ATCTTAT0.910.0723
CCTTATC0.910.1017
CTTATCC0.910.1153
GATAAGA0.900.0742
CTTATCT0.900.0821
TTATCCA0.890.1054