cis; GATAAGA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
GATAAGR IBOXCORENT [ref]
GATAAG  IBOX [ref] [ref] [ref]
GATAA   IBOXCORE
GATA    GATABOX [ref] [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GATAAGA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GATAAGA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.59At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.56At1g68520zinc finger (B-box type) family protein C2C2-CO-like
0.55At5g61590AP2 domain-containing transcription factor family protein AP2-EREBP
0.52At5g63470CCAAT-box binding transcription factor Hap5a, putative CCAAT-HAP5
0.48At1g19000myb family transcription factor MYB-related
0.48At1g68190zinc finger (B-box type) family protein C2C2-CO-like
0.48At2g17450zinc finger (C3HC4-type RING finger) family protein ((RHA3A)) C3H
0.47At4g36540basic helix-loop-helix (bHLH) family protein BHLH
0.47At5g11060homeobox protein knotted-1 like 4 (KNAT4) ((KNAT4)) Homeobox
0.45At2g18300basic helix-loop-helix (bHLH) family protein BHLH
0.45At5g63780zinc finger (C3HC4-type RING finger) family protein C3H
0.43At3g19860basic helix-loop-helix (bHLH) family protein BHLH
0.43At3g06380F-box family protein / tubby family protein TUB
0.42At4g28270zinc finger (C3HC4-type RING finger) family protein C3H
0.42At2g02450no apical meristem (NAM) family protein NAC

link to other 304 cis elements in ATTED

similar seq.
GATAAGA
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TCTTATC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GATAAGA1.000.0742
AGATAAG0.950.0838
CTTATCT0.930.0821
GATAAGG0.920.0739
TCTTATC0.920.0923
CCTTATC0.910.1017
AAGATAA0.900.0641
CTTATCC0.900.1153
ATCTTAT0.900.0723
GGATAAG0.900.0689