cis; GATAAGG


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
GATAAGR IBOXCORENT [ref]
GATAAG  IBOX [ref] [ref] [ref]
GATAA   IBOXCORE
GATA    GATABOX [ref] [ref] [ref] [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GATAAGG

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GATAAGG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.62At4g14540CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family CCAAT-HAP3
0.59At1g68520zinc finger (B-box type) family protein C2C2-CO-like
0.57At4g36540basic helix-loop-helix (bHLH) family protein BHLH
0.54At1g34310transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related ARF
0.54At1g68190zinc finger (B-box type) family protein C2C2-CO-like
0.52At2g18300basic helix-loop-helix (bHLH) family protein BHLH
0.51At5g56860zinc finger (GATA type) family protein C2C2-Gata
0.49At5g20220zinc knuckle (CCHC-type) family protein C2H2
0.49At4g01460basic helix-loop-helix (bHLH) family protein BHLH
0.48At1g22590MADS-box family protein MADS
0.47At3g02830zinc finger (CCCH-type) family protein ((ZFN1)) C2H2
0.47At5g60970TCP family transcription factor, putative TCP
0.47At5g63470CCAAT-box binding transcription factor Hap5a, putative CCAAT-HAP5
0.47At2g41940zinc finger (C2H2 type) family protein ((ZFP8)) C2H2
0.46At2g02450no apical meristem (NAM) family protein NAC

link to other 304 cis elements in ATTED

similar seq.
←GATAAGG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CCTTATC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GATAAGG1.000.0739
AGATAAG0.970.0838
CCTTATC0.950.1017
CTTATCT0.950.0821
TCTTATC0.950.0923
CTTATCC0.940.1153
TATCCAC0.940.0753
ATCTTAT0.930.0723
AAGATAA0.930.0641
TTATCCA0.920.1054