cis; AGGGTTT

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of AGGGTTT

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of AGGGTTT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.74At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.74At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.64At3g16870zinc finger (GATA type) family protein C2C2-Gata
0.64At1g71260expressed protein WHIRLY
0.61At1g27050homeobox-leucine zipper family protein Homeobox
0.60At1g61730DNA-binding storekeeper protein-related GeBP
0.57At5g16070chaperonin, putative TCP
0.57At2g36010E2F transcription factor-3 (E2F3) ((E2F3)) E2F-DP
0.56At1g72050zinc finger (C2H2 type) family protein C2H2
-0.55At3g02340zinc finger (C3HC4-type RING finger) family protein C3H
0.53At2g24500zinc finger (C2H2 type) family protein ((FZF)) C2H2
0.53At4g37750ovule development protein aintegumenta (ANT) ((ANT)) AP2-EREBP
-0.53At5g49450bZIP family transcription factor bZIP
0.52At3g52910expressed protein GRF
0.52At3g14740PHD finger family protein C2H2

link to other 304 cis elements in ATTED

similar seq.
←AGGGTTT→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; AAACCCT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
AGGGTTT1.000.1033
TAGGGTT0.990.0933
GGGTTTT0.990.0819
TTAGGGT0.990.0739
ACCCTAA0.970.1129
AAACCCT0.970.1420
AACCCTA0.960.1320
CTAGGGT0.960.0744
CCCTAAA0.960.0828
CCCTAAT0.950.0715