cis; CATGCAA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
TCCATAGCCATGCAWRCTGMAGAATGTC LEGUMINBOXLEGA5 [ref] [ref]
        CATGCA               RYREPEATBNNAPA [ref] [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CATGCAA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CATGCAA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.53At3g24650abscisic acid-insensitive protein 3 (ABI3) ((ABI3)) ABI3VP1
0.51At5g07500zinc finger (CCCH-type) family protein ((PEI1)) C2H2
0.50At3g26790transcriptional regulator (FUSCA3) ((FUS3)) ABI3VP1
-0.50At5g64340expressed protein BHLH
-0.48At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
-0.48At5g09460expressed protein BHLH
0.48At3g56660bZIP transcription factor family protein bZIP
-0.47At5g16070chaperonin, putative TCP
0.46At1g75490DRE-binding transcription factor, putative AP2-EREBP
0.45At5g47670CCAAT-box binding transcription factor family protein / leafy cotyledon 1-related (L1L) CCAAT-HAP3
-0.45At4g13640myb family transcription factor G2-like
0.45At3g15510no apical meristem (NAM) family protein (NAC2) ((ATNAC2)) NAC
0.45At1g77950MADS-box family protein MADS
0.45At3g44460basic leucine zipper transcription factor (BZIP67) ((DPBF2)) bZIP
0.45At3g13540myb family transcription factor ((ATMYB5)) MYB

link to other 304 cis elements in ATTED

similar seq.
←CATGCAA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TTGCATG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CATGCAA1.000.0986
CCATGCA0.810.0862
TGCATGT0.690.0760
TGCATGC0.680.0849
GCCATGC0.680.0717
CTCATGC0.670.0677
CATGTCA0.640.0733
CATGCAT0.610.0743