cis; CATGCAT

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
         CATGCAT              RYREPEATGMGY2 [ref]
         CATGCATG             RYREPEATVFLEB4 [ref] [ref] [ref] [ref] [ref] [ref] [ref]
       TCCATGCAT              SPHCOREZMC1 [ref] [ref]
     CGTCCATGCAT              SPHZMC1 [ref] [ref]
       TCCATGCATGCAC          RYREPEAT4 [ref] [ref] [ref] [ref] [ref]
CGTGTCGTCCATGCAT              CGTGTSPHZMC1 [ref]
         CATGCAY              RYREPEATLEGUMINBOX [ref]
 TCCATAGCCATGCAWRCTGMAGAATGTC LEGUMINBOXLEGA5 [ref] [ref]
         CATGCA               RYREPEATBNNAPA [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CATGCAT

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CATGCAT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.50At3g15500no apical meristem (NAM) family protein (NAC3) ((ATNAC3)) NAC
-0.49At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.48At3g15510no apical meristem (NAM) family protein (NAC2) ((ATNAC2)) NAC
-0.47At5g16070chaperonin, putative TCP
-0.46At1g71260expressed protein WHIRLY
0.45At1g69570Dof-type zinc finger domain-containing protein C2C2-Dof
0.45At3g26790transcriptional regulator (FUSCA3) ((FUS3)) ABI3VP1
0.45At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.45At5g55970zinc finger (C3HC4-type RING finger) family protein C3H
0.43At3g24650abscisic acid-insensitive protein 3 (ABI3) ((ABI3)) ABI3VP1
-0.43At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.43At3g13540myb family transcription factor ((ATMYB5)) MYB
-0.42At1g32330heat shock transcription factor family protein ((ATHSFA1D)) HSF
0.42At5g07500zinc finger (CCCH-type) family protein ((PEI1)) C2H2
0.42At5g47670CCAAT-box binding transcription factor family protein / leafy cotyledon 1-related (L1L) CCAAT-HAP3

link to other 304 cis elements in ATTED

similar seq.
←CATGCAT→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; ATGCATG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CATGCAT1.000.0743
TGCATGC0.700.0849
GCATGCA0.680.0650
ATGCATG0.630.0856
CCATGCA0.620.0862
CATGCAA0.610.0986