cis; GCGGGAA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
GCGGGAAA E2F1OSPCNA [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GCGGGAA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GCGGGAA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.68At3g14740PHD finger family protein C2H2
0.66At2g36010E2F transcription factor-3 (E2F3) ((E2F3)) E2F-DP
0.63At4g37750ovule development protein aintegumenta (ANT) ((ANT)) AP2-EREBP
0.63At4g01270zinc finger (C3HC4-type RING finger) family protein C3H
0.61At5g11510myb family transcription factor (MYB3R4) ((MYB3R-4)) MYB
0.59At1g16070tubby family protein TUB
-0.58At1g18470zinc finger (C3HC4-type RING finger) family protein C3H
0.58At3g57920squamosa promoter-binding protein, putative SBP
0.58At1g17920homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Homeobox
0.58At4g14770tesmin/TSO1-like CXC domain-containing protein CPP
0.57At3g61250myb family transcription factor (MYB17) MYB
0.56At4g29030glycine-rich protein Trihelix
0.56At2g06200expressed protein GRF
-0.56At2g43060expressed protein BHLH
0.56At1g63100scarecrow transcription factor family protein GRAS

link to other 304 cis elements in ATTED

similar seq.
←GCGGGAA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TTCCCGC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GCGGGAA1.000.0656
CTAGGGT0.850.0744
AAAGCCC0.830.0778
ACCCTAG0.830.0920
TAGGGTT0.820.0933
AAGCCCA0.820.1084
AACCCTA0.820.1320
ACCCTAA0.820.1129
AGCCCAT0.820.0992
AGCCCAA0.810.0776