cis; TGGGCCG


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
TGGGCY  SITEIIATCYTC [ref]
 GGGCC  SORLIP2AT [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of TGGGCCG

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of TGGGCCG.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.64At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.60At1g71260expressed protein WHIRLY
-0.54At3g52800zinc finger (AN1-like) family protein C2H2
0.54At3g21175zinc finger (GATA type) family protein ((ZML1)) C2C2-Gata
0.53At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.53At5g16070chaperonin, putative TCP
0.53At3g52910expressed protein GRF
0.51At1g44810expressed protein GeBP
-0.51At1g51700Dof-type zinc finger domain-containing protein (ADOF1) ((ADOF1)) C2C2-Dof
-0.51At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
-0.51At5g67300myb family transcription factor MYB
-0.50At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
-0.50At2g44580zinc finger (C3HC4-type RING finger) family protein C3H
0.49At5g05610PHD finger family protein Alfin-like
-0.49At1g08320bZIP family transcription factor bZIP

link to other 304 cis elements in ATTED

similar seq.
TGGGCCG
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CGGCCCA
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
TGGGCCG1.000.0689
TAGGCCC0.970.0889
GCCCATT0.970.1089
TTGGGCC0.970.0998
AGCCCAA0.960.0776
AGCCCAT0.960.0992
AAGCCCA0.960.1084
AAAGCCC0.960.0778
ATTGGGC0.960.0999
ATGGGCC0.960.0987