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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107933498   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 ghi-r.1   107946843   pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like 
 cit-r.1   102626573   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 gma-u.5   100819570   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 vvi-u.5   100240858   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 ppo-u.5   7491922   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 mtr-u.5   11430878   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 sly-u.5   101249228   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 sot-r.1   102602171   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 nta-r.1   107800009   uncharacterized LOC107800009 
 nta-r.1   107820366   uncharacterized LOC107820366 

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Top 50 coexpressed genes to AT4G19440 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G19440 (ath-e.2 coexpression data)

CoexMap"827685"


athAT4G19440 | Entrez gene ID : 827685    
Species ath ghi cit gma vvi ppo mtr sly sot nta cre bra hvu bna tae bdi osa zma sbi
Paralog 9 2 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000965 [list] [network] mitochondrial RNA 3'-end processing  (1 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_001190771.2 [sequence] [blastp]
NP_001329153.1 [sequence] [blastp]
NP_001329154.1 [sequence] [blastp]
NP_567587.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1  (predict for NP_001190771.2)
chlo 9,  cyto 1  (predict for NP_001329153.1)
chlo 9,  cyto 1  (predict for NP_001329154.1)
chlo 9,  cyto 1  (predict for NP_567587.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001190771.2)
chlo 7  (predict for NP_001329153.1)
chlo 7  (predict for NP_001329154.1)
chlo 7  (predict for NP_567587.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
AT4G19440
ath-u.5
for
AT4G19440
ath-r.7
for
AT4G19440
ath-m.9
for
AT4G19440
ath-m.4.bio
for
AT4G19440
ath-m.4.hor
for
AT4G19440
ath-m.4.lig
for
AT4G19440
ath-m.4.str
for
AT4G19440
ath-m.4.tis
for
AT4G19440
ghi-r.1
for
107933498
ghi-r.1
for
107946843
cit-r.1
for
102626573
gma-u.5
for
100819570
vvi-u.5
for
100240858
ppo-u.5
for
7491922
mtr-u.5
for
11430878
sly-u.5
for
101249228
sot-r.1
for
102602171
nta-r.1
for
107800009
nta-r.1
for
107820366


Ortholog ID: 14036
Species ath ghi ghi cit gma vvi ppo mtr sly sot nta nta
Symbol AT4G19440 LOC107933498 LOC107946843 LOC102626573 LOC100819570 LOC100240858 LOC7491922 LOC11430878 LOC101249228 LOC102602171 LOC107800009 LOC107820366
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic uncharacterized LOC107800009 uncharacterized LOC107820366
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827685 107933498 107946843 102626573 100819570 100240858 7491922 11430878 101249228 102602171 107800009 107820366
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