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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1  102626573  pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 ath-u.5  AT4G19440  Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5  100819570  pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 vvi-u.5  100240858  pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 ppo-u.5  7491922  pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 mtr-u.5  11430878  pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 sly-u.5  101249228  pentatricopeptide repeat-containing protein At4g19440, chloroplastic 

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Top 50 coexpressed genes to 102626573 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102626573 (cit-r.1 coexpression data)

CoexMap"102626573"


citLOC102626573 | Entrez gene ID : 102626573
Species cit ath gma vvi ppo mtr sly hvu zma bna bra ghi osa sbi bdi nta tae cre sot
Paralog 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_052298039.1 [sequence] [blastp]
XP_052298040.1 [sequence] [blastp]
XP_052298041.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 1,  cyto_mito 1,  nucl 1,  extr 1  (predict for XP_052298039.1)
chlo 6,  mito 1,  cyto_mito 1,  nucl 1,  extr 1  (predict for XP_052298040.1)
chlo 4,  nucl 2,  cyto 2,  cyto_nucl 2,  chlo_mito 2  (predict for XP_052298041.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_052298039.1)
mito 4  (predict for XP_052298040.1)
other 8  (predict for XP_052298041.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

cit-r.1
for
102626573


ath-u.5
for
AT4G19440


gma-u.5
for
100819570


vvi-u.5
for
100240858


ppo-u.5
for
7491922


mtr-u.5
for
11430878


sly-u.5
for
101249228



Ortholog ID: 14036
Species cit ath ghi ghi gma vvi ppo mtr sly sot nta nta
Symbol LOC102626573 AT4G19440 LOC107933498 LOC107946843 LOC100819570 LOC100240858 LOC7491922 LOC11430878 LOC101249228 LOC102602171 LOC107820366 LOC107800009
Function* pentatricopeptide repeat-containing protein At4g19440, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic uncharacterized LOC107820366 uncharacterized LOC107800009
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102626573 827685 107933498 107946843 100819570 100240858 7491922 11430878 101249228 102602171 107820366 107800009
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