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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103856774   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 bna-r.1   106431800   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 bna-r.1   106404075   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 ghi-r.1   107925311   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 ghi-r.1   107909648   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 cit-r.1   102629798   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 gma-u.5   100810760   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 gma-u.5   100789088   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 vvi-u.5   100242930   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 mtr-u.5   11412407   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 osa-u.5   4327084   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 zma-u.5   103642486   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 tae-r.2   123077677   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 hvu-r.1   123443088   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 sbi-r.1   8062429   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 bdi-r.1   100845277   pentatricopeptide repeat-containing protein DOT4, chloroplastic 

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Top 50 coexpressed genes to DOT4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DOT4 (ath-u.5 coexpression data)

CoexMap"827609"


athDOT4 | Entrez gene ID : 827609      
Species ath bra bna ghi cit gma vvi mtr osa zma tae hvu sbi bdi cre nta ppo sly sot
Paralog 9 1 2 2 1 2 1 1 1 1 1 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1900865 [list] [network] chloroplast RNA modification  (18 genes)  IMP  
GO:0010588 [list] [network] cotyledon vascular tissue pattern formation  (19 genes)  IMP  
GO:0010305 [list] [network] leaf vascular tissue pattern formation  (29 genes)  IMP  
GO:0010087 [list] [network] phloem or xylem histogenesis  (125 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IMP  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
Protein NP_193610.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  E.R._vacu 1  (predict for NP_193610.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_193610.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
DOT4
ath-r.7
for
DOT4
ath-m.9
for
DOT4
ath-e.2
for
DOT4
ath-m.4.bio
for
DOT4
ath-m.4.hor
for
DOT4
ath-m.4.lig
for
DOT4
ath-m.4.str
for
DOT4
ath-m.4.tis
for
DOT4
bra-r.6
for
103856774
bna-r.1
for
106431800
bna-r.1
for
106404075
ghi-r.1
for
107925311
ghi-r.1
for
107909648
cit-r.1
for
102629798
gma-u.5
for
100810760
gma-u.5
for
100789088
vvi-u.5
for
100242930
mtr-u.5
for
11412407
osa-u.5
for
4327084
zma-u.5
for
103642486
tae-r.2
for
123077677
hvu-r.1
for
123443088
sbi-r.1
for
8062429
bdi-r.1
for
100845277


Ortholog ID: 12215
Species ath bra bna bna ghi ghi cit gma gma vvi mtr osa zma tae hvu sbi bdi
Symbol DOT4 LOC103856774 LOC106431800 LOC106404075 LOC107925311 LOC107909648 LOC102629798 LOC100810760 LOC100789088 LOC100242930 LOC11412407 LOC4327084 LOC103642486 LOC123077677 LOC123443088 LOC8062429 LOC100845277
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827609 103856774 106431800 106404075 107925311 107909648 102629798 100810760 100789088 100242930 11412407 4327084 103642486 123077677 123443088 8062429 100845277
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