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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1  8062429  pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 zma-u.5  103642486  pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 osa-u.5  4327084  pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 ath-u.5  DOT4  Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5  100810760  pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 gma-u.5  100789088  pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 vvi-u.5  100242930  pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 mtr-u.5  11412407  pentatricopeptide repeat-containing protein DOT4, chloroplastic 

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Top 50 coexpressed genes to 8062429 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8062429 (sbi-r.1 coexpression data)

CoexMap"8062429"


sbiLOC8062429 | Entrez gene ID : 8062429
Species sbi zma osa ath gma vvi mtr ppo cre ghi cit hvu sly bdi bra sot tae nta bna
Paralog 1 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (378 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002445851.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_002445851.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002445851.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

sbi-r.1
for
8062429

.

zma-u.5
for
103642486

.

osa-u.5
for
4327084

.

ath-u.5
for
DOT4

.

gma-u.5
for
100810760

.

gma-u.5
for
100789088

.

vvi-u.5
for
100242930

.

mtr-u.5
for
11412407

.


Ortholog ID: 12215
Species ath gma gma osa zma bra vvi mtr tae hvu ghi ghi bna bna sbi cit bdi
Symbol DOT4 LOC100810760 LOC100789088 LOC4327084 LOC103642486 LOC103856774 LOC100242930 LOC11412407 LOC123077677 LOC123443088 LOC107909648 LOC107925311 LOC106431800 LOC106404075 LOC8062429 LOC102629798 LOC100845277
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827609 100810760 100789088 4327084 103642486 103856774 100242930 11412407 123077677 123443088 107909648 107925311 106431800 106404075 8062429 102629798 100845277
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