ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-r.7	FILA	YABBY protein FILa
gma-u.5	FILA	YABBY protein FILa
gma-u.5	100781267	protein YABBY 3
gma-u.5	100786175	protein YABBY 7
gma-u.5	100794423	protein YABBY 5
ppo-u.5	7488885	axial regulator YABBY 1
ppo-u.5	18096332	axial regulator YABBY 1
ppo-u.5	7465527	protein YABBY 4
ath-u.5	AFO	Plant-specific transcription factor YABBY family protein
bra-r.6	103830131	axial regulator YABBY 1
bra-r.6	103866196	axial regulator YABBY 1
vvi-u.5	100243667	axial regulator YABBY 1
vvi-u.5	100267708	protein YABBY 4
ghi-r.1	121211138	axial regulator YABBY 1
ghi-r.1	107954568	axial regulator YABBY 1
ghi-r.1	107934031	axial regulator YABBY 1
bna-r.1	106432121	axial regulator YABBY 1
cit-r.1	102622362	axial regulator YABBY 1-like
cit-r.1	102614498	axial regulator YABBY 1
sly-u.5	YABBY1a	axial regulator YABBY1a
sly-u.5	YABBY1b	axial regulator YABBY1b
sot-r.1	102604849	axial regulator YABBY 1
sot-r.1	102577797	protein YABBY 4
nta-r.1	107822998	axial regulator YABBY 1-like
nta-r.1	107802952	axial regulator YABBY 1
nta-r.1	107811927	axial regulator YABBY 1
osa-u.5	4330130	protein YABBY 4-like
osa-u.5	4336518	protein YABBY 5-like
zma-u.5	100193442	putative YABBY domain transcription factor family protein
zma-u.5	542128	yabby14
zma-u.5	542129	protein YABBY 4
tae-r.2	123189917	protein YABBY 5
tae-r.2	123144945	protein YABBY 4
tae-r.2	123137614	protein YABBY 4
sbi-r.1	8083323	protein YABBY 5
sbi-r.1	8075170	protein YABBY 4
bdi-r.1	100831851	protein YABBY 4
bdi-r.1	100845555	protein YABBY 5

Annotation

functional annotation

KEGG

GO BP

GO:1902183 [list] [network] regulation of shoot apical meristem development	(4 genes)	IEA
GO:2000024 [list] [network] regulation of leaf development	(4 genes)	IEA
GO:0009944 [list] [network] polarity specification of adaxial/abaxial axis	(10 genes)	IEA
GO:0010158 [list] [network] abaxial cell fate specification	(20 genes)	IEA
GO:0045165 [list] [network] cell fate commitment	(44 genes)	IEA
GO:0010154 [list] [network] fruit development	(52 genes)	IEA
GO:0007275 [list] [network] multicellular organism development	(415 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

Protein

NP_001344763.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_001344763.1)

Subcellular
localization
TargetP

other 7, chlo 5

(predict for NP_001344763.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-r.7 for FILA	gma-u.5 for FILA	gma-u.5 for 100781267	gma-u.5 for 100786175	gma-u.5 for 100794423	ppo-u.5 for 7488885	ppo-u.5 for 18096332	ppo-u.5 for 7465527	ath-u.5 for AFO	bra-r.6 for 103830131	bra-r.6 for 103866196	vvi-u.5 for 100243667	vvi-u.5 for 100267708	ghi-r.1 for 121211138	ghi-r.1 for 107954568	ghi-r.1 for 107934031	bna-r.1 for 106432121	cit-r.1 for 102622362	cit-r.1 for 102614498	sly-u.5 for YABBY1a	sly-u.5 for YABBY1b	sot-r.1 for 102604849	sot-r.1 for 102577797	nta-r.1 for 107822998	nta-r.1 for 107802952	nta-r.1 for 107811927	osa-u.5 for 4330130	osa-u.5 for 4336518	zma-u.5 for 100193442	zma-u.5 for 542128	zma-u.5 for 542129	tae-r.2 for 123189917	tae-r.2 for 123144945	tae-r.2 for 123137614	sbi-r.1 for 8083323	sbi-r.1 for 8075170	bdi-r.1 for 100831851	bdi-r.1 for 100845555

Ortholog

Ortholog ID: 2893

Species

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

sbi

bdi

Symbol

FILA

AFO

YABBY1a

YABBY1b

Function^*

YABBY protein FILa

protein YABBY 3

protein YABBY 5

axial regulator YABBY 1

protein YABBY 4

Plant-specific transcription factor YABBY family protein

axial regulator YABBY 1

protein YABBY 4

axial regulator YABBY 1

axial regulator YABBY 1-like

axial regulator YABBY 1

axial regulator YABBY1a

axial regulator YABBY1b

axial regulator YABBY 1

protein YABBY 4

axial regulator YABBY 1

protein YABBY 4

protein YABBY 4-like

protein YABBY 5-like

putative YABBY domain transcription factor family protein

yabby14

protein YABBY 4

protein YABBY 5

protein YABBY 4

protein YABBY 5

protein YABBY 4

protein YABBY 5

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi04016	MAPK signaling pathway - plant	2
ghi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3

Expression

Expression pattern

Entrez Gene ID^*

100798441

100781267

100794423

7488885

7465527

819127

103830131

103866196

100243667

100267708

121211138

107934031

107886089

106432121

102622362

102614498

101246760

101247051

102604849

102577797

107802952

107811927

107798917

4330130

4336518

100193442

542128

542129

123189917

123137614

123127847

8083323

8075170

100831851

100845555

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to FILA (gma-r.7 coexpression data)

Top 50 enrichment test to FILA (gma-r.7 coexpression data)


Species	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	sbi	bdi	cre	hvu	mtr
Paralog	5	3	1	2	2	3	1	2	2	2	3	2	3	3	2	2	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to FILA (gma-r.7 coexpression data)

Top 50 enrichment test to FILA (gma-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**