ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	YABBY1b	axial regulator YABBY1b
sly-r.6	YABBY1b	axial regulator YABBY1b
sly-u.5	YABBY1a	axial regulator YABBY1a
sot-r.1	102577797	protein YABBY 4
sot-r.1	102604849	axial regulator YABBY 1
nta-r.1	107822998	axial regulator YABBY 1-like
nta-r.1	107811927	axial regulator YABBY 1
nta-r.1	107802952	axial regulator YABBY 1
ath-u.5	AFO	Plant-specific transcription factor YABBY family protein
gma-u.5	100781267	protein YABBY 3
gma-u.5	100786175	protein YABBY 7
gma-u.5	100794423	protein YABBY 5
bra-r.6	103866196	axial regulator YABBY 1
bra-r.6	103830131	axial regulator YABBY 1
vvi-u.5	100243667	axial regulator YABBY 1
vvi-u.5	100267708	protein YABBY 4
ppo-u.5	18096332	axial regulator YABBY 1
ppo-u.5	7465527	protein YABBY 4
ghi-r.1	121211138	axial regulator YABBY 1
ghi-r.1	107954568	axial regulator YABBY 1
ghi-r.1	107934031	axial regulator YABBY 1
bna-r.1	106371208	axial regulator YABBY 1-like
bna-r.1	106391936	axial regulator YABBY 1-like
cit-r.1	102614498	axial regulator YABBY 1
cit-r.1	102622362	axial regulator YABBY 1-like
osa-u.5	4330130	protein YABBY 4-like
osa-u.5	4336518	protein YABBY 5-like
zma-u.5	542128	yabby14
zma-u.5	100193442	putative YABBY domain transcription factor family protein
zma-u.5	542129	protein YABBY 4
tae-r.2	123144945	protein YABBY 4
tae-r.2	123189917	protein YABBY 5
tae-r.2	123137614	protein YABBY 4
sbi-r.1	8083323	protein YABBY 5
sbi-r.1	8075170	protein YABBY 4
bdi-r.1	100845555	protein YABBY 5
bdi-r.1	100831851	protein YABBY 4

Annotation

functional annotation

Function

axial regulator YABBY1b

KEGG

GO BP

GO:1902183 [list] [network] regulation of shoot apical meristem development	(2 genes)	IEA
GO:2000024 [list] [network] regulation of leaf development	(2 genes)	IEA
GO:0009944 [list] [network] polarity specification of adaxial/abaxial axis	(3 genes)	IEA
GO:0010158 [list] [network] abaxial cell fate specification	(10 genes)	IEA
GO:0045165 [list] [network] cell fate commitment	(19 genes)	IEA
GO:0010154 [list] [network] fruit development	(38 genes)	IEA
GO:0007275 [list] [network] multicellular organism development	(199 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

Protein

NP_001353824.1 [sequence] [blastp]
XP_025888199.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1, cyto 1	(predict for NP_001353824.1)
nucl 9, cyto 1, cysk 1	(predict for XP_025888199.2)

Subcellular
localization
TargetP

chlo 6, other 6	(predict for NP_001353824.1)
scret 7	(predict for XP_025888199.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for YABBY1b	sly-r.6 for YABBY1b	sly-u.5 for YABBY1a	sot-r.1 for 102577797	sot-r.1 for 102604849	nta-r.1 for 107822998	nta-r.1 for 107811927	nta-r.1 for 107802952	ath-u.5 for AFO	gma-u.5 for 100781267	gma-u.5 for 100786175	gma-u.5 for 100794423	bra-r.6 for 103866196	bra-r.6 for 103830131	vvi-u.5 for 100243667	vvi-u.5 for 100267708	ppo-u.5 for 18096332	ppo-u.5 for 7465527	ghi-r.1 for 121211138	ghi-r.1 for 107954568	ghi-r.1 for 107934031	bna-r.1 for 106371208	bna-r.1 for 106391936	cit-r.1 for 102614498	cit-r.1 for 102622362	osa-u.5 for 4330130	osa-u.5 for 4336518	zma-u.5 for 542128	zma-u.5 for 100193442	zma-u.5 for 542129	tae-r.2 for 123144945	tae-r.2 for 123189917	tae-r.2 for 123137614	sbi-r.1 for 8083323	sbi-r.1 for 8075170	bdi-r.1 for 100845555	bdi-r.1 for 100831851

Please wait a moment.

Ortholog

Ortholog ID: 2893

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

ghi

bna

cit

osa

zma

tae

sbi

bdi

Symbol

YABBY1b

YABBY1a

AFO

FILA

Function^*

axial regulator YABBY1b

axial regulator YABBY1a

protein YABBY 4

axial regulator YABBY 1

protein YABBY 4

Plant-specific transcription factor YABBY family protein

protein YABBY 3

protein YABBY 5

YABBY protein FILa

axial regulator YABBY 1

protein YABBY 4

axial regulator YABBY 1

axial regulator YABBY 1-like

protein YABBY 4-like

protein YABBY 5-like

yabby14

putative YABBY domain transcription factor family protein

protein YABBY 4

protein YABBY 5

protein YABBY 4

protein YABBY 5

protein YABBY 4

protein YABBY 5

protein YABBY 4

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi04016	MAPK signaling pathway - plant	2
ghi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3

Expression

Expression pattern

Entrez Gene ID^*

101247051

101246760

102577797

102604849

107811927

107802952

107798917

819127

100781267

100794423

100798441

103866196

103830131

100243667

100267708

7465527

7488885

121211138

107934031

107886089

106432121

102614498

102622362

4330130

4336518

542128

100193442

542129

123189917

123137614

123127847

8083323

8075170

100845555

100831851

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to YABBY1b (sly-u.5 coexpression data)

Top 50 enrichment test to YABBY1b (sly-u.5 coexpression data)


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	ghi	bna	cit	osa	zma	tae	sbi	bdi	cre	hvu	mtr
Paralog	3	2	3	1	3	2	2	2	3	2	2	2	3	3	2	2	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to YABBY1b (sly-u.5 coexpression data)

Top 50 enrichment test to YABBY1b (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**