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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11412407   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 mtr-r.5   11412407   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 gma-u.5   100810760   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 gma-u.5   100789088   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 ath-u.5   DOT4   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103856774   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 vvi-u.5   100242930   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 ghi-r.1   107925311   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 ghi-r.1   107909648   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 bna-r.1   106431800   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 bna-r.1   106404075   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 cit-r.1   102629798   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 osa-u.5   4327084   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 zma-u.5   103642486   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 tae-r.2   123077677   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 hvu-r.1   123443088   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 sbi-r.1   8062429   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 bdi-r.1   100845277   pentatricopeptide repeat-containing protein DOT4, chloroplastic 

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Top 50 coexpressed genes to 11412407 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11412407 (mtr-u.5 coexpression data)

CoexMap"11412407"


mtrLOC11412407 | Entrez gene ID : 11412407      
Species mtr gma ath bra vvi ghi bna cit osa zma tae hvu sbi bdi sot sly ppo cre nta
Paralog 2 2 1 1 1 2 2 1 1 1 1 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (432 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (919 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_024627516.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_024627516.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_024627516.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11412407
mtr-r.5
for
11412407
gma-u.5
for
100810760
gma-u.5
for
100789088
ath-u.5
for
DOT4
bra-r.6
for
103856774
vvi-u.5
for
100242930
ghi-r.1
for
107925311
ghi-r.1
for
107909648
bna-r.1
for
106431800
bna-r.1
for
106404075
cit-r.1
for
102629798
osa-u.5
for
4327084
zma-u.5
for
103642486
tae-r.2
for
123077677
hvu-r.1
for
123443088
sbi-r.1
for
8062429
bdi-r.1
for
100845277


Ortholog ID: 12215
Species mtr gma gma ath bra vvi ghi ghi bna bna cit osa zma tae hvu sbi bdi
Symbol LOC11412407 LOC100810760 LOC100789088 DOT4 LOC103856774 LOC100242930 LOC107925311 LOC107909648 LOC106431800 LOC106404075 LOC102629798 LOC4327084 LOC103642486 LOC123077677 LOC123443088 LOC8062429 LOC100845277
Function* pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11412407 100810760 100789088 827609 103856774 100242930 107925311 107909648 106431800 106404075 102629798 4327084 103642486 123077677 123443088 8062429 100845277
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