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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11430878   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 mtr-r.5   11430878   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 gma-u.5   100819570   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 ppo-u.5   7491922   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 ath-u.5   AT4G19440   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100240858   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 
 sly-u.5   101249228   pentatricopeptide repeat-containing protein At4g19440, chloroplastic 

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Top 50 coexpressed genes to 11430878 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11430878 (mtr-u.5 coexpression data)

CoexMap"11430878"


mtrLOC11430878 | Entrez gene ID : 11430878    
Species mtr gma ppo ath vvi sly sot hvu tae cit sbi zma ghi cre bna nta bdi bra osa
Paralog 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_003628993.2 [sequence] [blastp]
XP_024629486.1 [sequence] [blastp]
XP_039684820.1 [sequence] [blastp]
XP_039684821.1 [sequence] [blastp]
XP_039684823.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_003628993.2)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_024629486.1)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_039684820.1)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_039684821.1)
chlo 6,  chlo_mito 5,  mito 4,  cyto_mito 2  (predict for XP_039684823.1)
Subcellular
localization
TargetP
other 5  (predict for XP_003628993.2)
other 5  (predict for XP_024629486.1)
other 5  (predict for XP_039684820.1)
other 5  (predict for XP_039684821.1)
other 5  (predict for XP_039684823.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11430878

.
mtr-r.5
for
11430878

.
gma-u.5
for
100819570

.
ppo-u.5
for
7491922

.
ath-u.5
for
AT4G19440

.
vvi-u.5
for
100240858

.
sly-u.5
for
101249228

.


Ortholog ID: 14036
Species ath gma sly vvi ppo mtr ghi ghi sot cit nta nta
Symbol AT4G19440 LOC100819570 LOC101249228 LOC100240858 LOC7491922 LOC11430878 LOC107933498 LOC107946843 LOC102602171 LOC102626573 LOC107820366 LOC107800009
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like pentatricopeptide repeat-containing protein At4g19440, chloroplastic pentatricopeptide repeat-containing protein At4g19440, chloroplastic uncharacterized LOC107820366 uncharacterized LOC107800009
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827685 100819570 101249228 100240858 7491922 11430878 107933498 107946843 102602171 102626573 107820366 107800009
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