ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-u.5	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-r.7	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-e.2	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-m.4.bio	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-m.4.hor	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-m.4.lig	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-m.4.str	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-m.4.tis	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-u.5	AT3G18230	Octicosapeptide/Phox/Bem1p family protein
bra-r.6	103827600	chromatin modification-related protein eaf-1
bra-r.6	103838209	uncharacterized LOC103838209
ghi-r.1	107903879	uncharacterized LOC107903879
ghi-r.1	107926629	probable serine/threonine-protein kinase yakA
ghi-r.1	107953333	probable serine/threonine-protein kinase yakA
cit-r.1	102609615	uncharacterized LOC102609615
gma-u.5	100808843	uncharacterized LOC100808843
gma-u.5	100805172	uncharacterized LOC100805172
gma-u.5	100784396	neurogenic protein mastermind
vvi-u.5	100250808	protein PAL OF QUIRKY
ppo-u.5	7482856	uncharacterized LOC7482856
ppo-u.5	7459817	uncharacterized LOC7459817
mtr-u.5	25485469	putative mediator of RNA polymerase II transcription subunit 12
mtr-u.5	11423547	uncharacterized LOC11423547
sly-u.5	101268863	protein PAL OF QUIRKY
sly-u.5	101252579	RAF-like serine/threonine-protein kinase PRAF
sly-u.5	101244569	uncharacterized LOC101244569
sot-r.1	102602895	uncharacterized LOC102602895
sot-r.1	102590490	uncharacterized LOC102590490
sot-r.1	102587767	activating signal cointegrator 1 complex subunit 2 homolog
nta-r.1	107784491	uncharacterized LOC107784491
nta-r.1	107823405	uncharacterized LOC107823405
osa-u.5	4325473	leucine-rich repeat extensin-like protein 2
zma-u.5	103649801	leucine-rich repeat extensin-like protein 2
zma-u.5	100279440	Octicosapeptide/Phox/Bem1p family protein
tae-r.2	123059998	RNA polymerase II degradation factor 1
tae-r.2	123068462	RNA polymerase II degradation factor 1
tae-r.2	123076977	mediator of RNA polymerase II transcription subunit 15
hvu-r.1	123442587	ataxin-2 homolog
sbi-r.1	8060830	RNA polymerase II degradation factor 1
bdi-r.1	100836637	trithorax group protein osa

Top 50 coexpressed genes to PDE331 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to PDE331 (ath-m.9 coexpression data)

CoexMap"814647"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0012505 [list] [network] endomembrane system	(2163 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14000 genes)	IDA

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_565256.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_565256.1)

Subcellular
localization
TargetP

chlo 7

(predict for NP_565256.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for PDE331	ath-u.5 for PDE331	ath-r.7 for PDE331	ath-e.2 for PDE331	ath-m.4.bio for PDE331	ath-m.4.hor for PDE331	ath-m.4.lig for PDE331	ath-m.4.str for PDE331	ath-m.4.tis for PDE331	ath-u.5 for AT3G18230	bra-r.6 for 103827600	bra-r.6 for 103838209	ghi-r.1 for 107903879	ghi-r.1 for 107926629	ghi-r.1 for 107953333	cit-r.1 for 102609615	gma-u.5 for 100808843	gma-u.5 for 100805172	gma-u.5 for 100784396	vvi-u.5 for 100250808	ppo-u.5 for 7482856	ppo-u.5 for 7459817	mtr-u.5 for 25485469	mtr-u.5 for 11423547	sly-u.5 for 101268863	sly-u.5 for 101252579	sly-u.5 for 101244569	sot-r.1 for 102602895	sot-r.1 for 102590490	sot-r.1 for 102587767	nta-r.1 for 107784491	nta-r.1 for 107823405	osa-u.5 for 4325473	zma-u.5 for 103649801	zma-u.5 for 100279440	tae-r.2 for 123059998	tae-r.2 for 123068462	tae-r.2 for 123076977	hvu-r.1 for 123442587	sbi-r.1 for 8060830	bdi-r.1 for 100836637

Ortholog

Ortholog ID: 2606

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

PDE331

Function^*

Octicosapeptide/Phox/Bem1p family protein

chromatin modification-related protein eaf-1

uncharacterized LOC103838209

R3H domain-containing protein 2

uncharacterized BNAA09G18520D

uncharacterized LOC107903879

probable serine/threonine-protein kinase yakA

RNA polymerase II degradation factor 1

uncharacterized LOC102609615

uncharacterized LOC100805172

neurogenic protein mastermind

protein PAL OF QUIRKY

uncharacterized LOC7482856

uncharacterized LOC7459817

putative mediator of RNA polymerase II transcription subunit 12

uncharacterized LOC11423547

protein PAL OF QUIRKY

RAF-like serine/threonine-protein kinase PRAF

uncharacterized LOC101244569

uncharacterized LOC102602895

uncharacterized LOC102590490

activating signal cointegrator 1 complex subunit 2 homolog

uncharacterized LOC107784491

uncharacterized LOC107823405

leucine-rich repeat extensin-like protein 2

Octicosapeptide/Phox/Bem1p family protein

RNA polymerase II degradation factor 1

mediator of RNA polymerase II transcription subunit 15

ataxin-2 homolog

RNA polymerase II degradation factor 1

trithorax group protein osa

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	3
bra04144	Endocytosis	3
bra05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00010	Glycolysis / Gluconeogenesis	3
bra00051	Fructose and mannose metabolism	3
bra00052	Galactose metabolism	3
bra00500	Starch and sucrose metabolism	3
bra00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00541	Biosynthesis of various nucleotide sugars	3
bna01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma03272	Virion - Hepatitis viruses	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03410	Base excision repair	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	4
bdi04016	MAPK signaling pathway - plant	3

Expression

Expression pattern

Entrez Gene ID^*

814647

821351

103827600

103838209

103839502

106432059

107903879

107926629

107950992

102609615

100805172

100784396

100775954

100250808

7482856

7459817

25485469

11423547

101268863

101252579

101244569

102602895

102590490

102587767

107784491

107823405

4325473

103649801

100279440

123059998

123068462

123076977

123442587

8060830

100836637

The preparation time of this page was 0.2 [sec].


Species	ath	bra	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bna
Paralog	10	2	3	1	3	1	2	2	3	3	2	1	2	3	1	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to PDE331 (ath-m.9 coexpression data)

Top 50 enrichment test to PDE331 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**