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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT2G39390   Ribosomal L29 family protein 
 ath-u.5   AT2G39390   Ribosomal L29 family protein 
 ath-r.7   AT2G39390   Ribosomal L29 family protein 
 ath-e.2   AT2G39390   Ribosomal L29 family protein 
 ath-m.4.bio   AT2G39390   Ribosomal L29 family protein 
 ath-m.4.hor   AT2G39390   Ribosomal L29 family protein 
 ath-m.4.lig   AT2G39390   Ribosomal L29 family protein 
 ath-m.4.str   AT2G39390   Ribosomal L29 family protein 
 ath-m.4.tis   AT2G39390   Ribosomal L29 family protein 
 ath-u.5   AT3G09500   Ribosomal L29 family protein 
 ath-u.5   AT3G55170   Ribosomal L29 family protein 
 ath-u.5   AT5G02610   Ribosomal L29 family protein 
 bra-r.6   103850454   60S ribosomal protein L35-4 
 bra-r.6   103870540   60S ribosomal protein L35-1 
 bna-r.1   106452747   60S ribosomal protein L35-1 
 bna-r.1   106450278   60S ribosomal protein L35-2-like 
 bna-r.1   106443587   60S ribosomal protein L35-2 
 ghi-r.1   107950294   60S ribosomal protein L35 
 ghi-r.1   107897769   60S ribosomal protein L35 
 ghi-r.1   107904104   60S ribosomal protein L35 
 cit-r.1   102618448   60S ribosomal protein L35 
 cit-r.1   102618082   60S ribosomal protein L35-like 
 gma-u.5   100306624   uncharacterized LOC100306624 
 gma-u.5   100801539   60S ribosomal protein L35 
 gma-u.5   100798230   60S ribosomal protein L35 
 vvi-u.5   100265729   large ribosomal subunit protein uL29 
 vvi-u.5   100246718   large ribosomal subunit protein uL29 
 ppo-u.5   7491950   60S ribosomal protein L35 
 ppo-u.5   7469794   60S ribosomal protein L35 
 ppo-u.5   7458614   60S ribosomal protein L35 
 mtr-u.5   11446573   60S ribosomal protein L35 
 mtr-u.5   11412433   60S ribosomal protein L35 
 mtr-u.5   11408161   60S ribosomal protein L35 
 sly-u.5   101256286   large ribosomal subunit protein uL29 
 sly-u.5   101267698   large ribosomal subunit protein uL29-like 
 sly-u.5   778319   60S ribosomal protein L35-like 
 sot-r.1   102598040   60S ribosomal protein L35 
 sot-r.1   107058344   60S ribosomal protein L35-like 
 sot-r.1   102594168   60S ribosomal protein L35-like 
 nta-r.1   107830981   large ribosomal subunit protein uL29 
 nta-r.1   107763659   large ribosomal subunit protein uL29 
 nta-r.1   107775827   large ribosomal subunit protein uL29-like 
 osa-u.5   4329423   large ribosomal subunit protein uL29 
 osa-u.5   4335607   large ribosomal subunit protein uL29 
 zma-u.5   100282013   60S ribosomal protein L35 
 zma-u.5   100282133   60S ribosomal protein L35 
 zma-u.5   100281802   60S ribosomal protein L35 
 tae-r.2   123045266   60S ribosomal protein L35-2 
 tae-r.2   123189008   60S ribosomal protein L35-2 
 tae-r.2   123053102   60S ribosomal protein L35-2 
 hvu-r.1   123426489   60S ribosomal protein L35-4 
 sbi-r.1   8059570   60S ribosomal protein L35-4 
 sbi-r.1   8056070   60S ribosomal protein L35-4 
 bdi-r.1   100824864   60S ribosomal protein L35-4 
 bdi-r.1   100820930   60S ribosomal protein L35-2 
 cre-r.1   CHLRE_14g617900v5   ribosomal protein L35 

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Top 50 coexpressed genes to AT2G39390 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G39390 (ath-m.9 coexpression data)

CoexMap"818524"


athAT2G39390 | Entrez gene ID : 818524    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 2 3 3 2 3 2 3 3 3 3 3 2 3 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (124 genes)  HDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA RCA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_181471.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  nucl_plas 2,  plas 1  (predict for NP_181471.1)
Subcellular
localization
TargetP
other 9  (predict for NP_181471.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT2G39390
ath-u.5
for
AT2G39390
ath-r.7
for
AT2G39390
ath-e.2
for
AT2G39390
ath-m.4.bio
for
AT2G39390
ath-m.4.hor
for
AT2G39390
ath-m.4.lig
for
AT2G39390
ath-m.4.str
for
AT2G39390
ath-m.4.tis
for
AT2G39390
ath-u.5
for
AT3G09500
ath-u.5
for
AT3G55170
ath-u.5
for
AT5G02610
bra-r.6
for
103850454
bra-r.6
for
103870540
bna-r.1
for
106452747
bna-r.1
for
106450278
bna-r.1
for
106443587
ghi-r.1
for
107950294
ghi-r.1
for
107897769
ghi-r.1
for
107904104
cit-r.1
for
102618448
cit-r.1
for
102618082
gma-u.5
for
100306624
gma-u.5
for
100801539
gma-u.5
for
100798230
vvi-u.5
for
100265729
vvi-u.5
for
100246718
ppo-u.5
for
7491950
ppo-u.5
for
7469794
ppo-u.5
for
7458614
mtr-u.5
for
11446573
mtr-u.5
for
11412433
mtr-u.5
for
11408161
sly-u.5
for
101256286
sly-u.5
for
101267698
sly-u.5
for
778319
sot-r.1
for
102598040
sot-r.1
for
107058344
sot-r.1
for
102594168
nta-r.1
for
107830981
nta-r.1
for
107763659
nta-r.1
for
107775827
osa-u.5
for
4329423
osa-u.5
for
4335607
zma-u.5
for
100282013
zma-u.5
for
100282133
zma-u.5
for
100281802
tae-r.2
for
123045266
tae-r.2
for
123189008
tae-r.2
for
123053102
hvu-r.1
for
123426489
sbi-r.1
for
8059570
sbi-r.1
for
8056070
bdi-r.1
for
100824864
bdi-r.1
for
100820930
cre-r.1
for
CHLRE_14g617900v5


Ortholog ID: 1340
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol AT2G39390 AT3G55170 AT5G02610 LOC103870540 LOC103859293 LOC103847436 LOC106452747 LOC106439191 LOC106389527 LOC107918620 LOC107957340 LOC107932419 LOC102618448 LOC102618082 LOC100801539 LOC100798230 LOC100305671 LOC100265729 LOC100246718 LOC7491950 LOC7469794 LOC7458614 LOC11446573 LOC11408161 LOC25484086 LOC101256286 LOC101267698 LOC778319 LOC102586719 LOC102579307 LOC102577759 LOC107775827 LOC107822355 LOC142166078 LOC4329423 LOC4335607 LOC100282013 LOC100282133 LOC100281802 LOC123045266 LOC123189008 LOC123053102 LOC123426489 LOC8059570 LOC8056070 LOC100824864 LOC100820930 CHLRE_14g617900v5
Function* Ribosomal L29 family protein Ribosomal L29 family protein Ribosomal L29 family protein 60S ribosomal protein L35-1 60S ribosomal protein L35-1 60S ribosomal protein L35-4 60S ribosomal protein L35-1 60S ribosomal protein L35-1 60S ribosomal protein L35-4 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35-like 60S ribosomal protein L35 60S ribosomal protein L35 uncharacterized LOC100305671 large ribosomal subunit protein uL29 large ribosomal subunit protein uL29 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 large ribosomal subunit protein uL29 large ribosomal subunit protein uL29-like 60S ribosomal protein L35-like 60S ribosomal protein L35 60S ribosomal protein L35-like uncharacterized LOC102577759 large ribosomal subunit protein uL29-like large ribosomal subunit protein uL29 large ribosomal subunit protein uL29 large ribosomal subunit protein uL29 large ribosomal subunit protein uL29 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35-2 60S ribosomal protein L35-2 60S ribosomal protein L35-2 60S ribosomal protein L35-4 60S ribosomal protein L35-4 60S ribosomal protein L35-4 60S ribosomal protein L35-4 60S ribosomal protein L35-2 ribosomal protein L35
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 19
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 16
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
sot00220 Arginine biosynthesis 2
sot00240 Pyrimidine metabolism 2
sot00250 Alanine, aspartate and glutamate metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta04120 Ubiquitin mediated proteolysis 4
nta03018 RNA degradation 3
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 18
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818524 824683 831853 103870540 103859293 103847436 106452747 106439191 106389527 107918620 107957340 107932419 102618448 102618082 100801539 100798230 100305671 100265729 100246718 7491950 7469794 7458614 11446573 11408161 25484086 101256286 101267698 778319 102586719 102579307 102577759 107775827 107822355 142166078 4329423 4335607 100282013 100282133 100281802 123045266 123189008 123053102 123426489 8059570 8056070 100824864 100820930 5715848
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