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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-u.5   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-r.7   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-e.2   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.bio   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.hor   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.lig   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.str   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.tis   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 bra-r.6   103850278   DEAD-box ATP-dependent RNA helicase 38 
 bra-r.6   103863439   DEAD-box ATP-dependent RNA helicase 38 
 bna-r.1   106452440   DEAD-box ATP-dependent RNA helicase 38-like 
 bna-r.1   106402035   DEAD-box ATP-dependent RNA helicase 38 
 bna-r.1   111203637   DEAD-box ATP-dependent RNA helicase 38 
 ghi-r.1   107899509   DEAD-box ATP-dependent RNA helicase 38-like 
 ghi-r.1   107931533   DEAD-box ATP-dependent RNA helicase 38 
 cit-r.1   102609367   DEAD-box ATP-dependent RNA helicase 38 
 gma-u.5   100784739   DEAD-box ATP-dependent RNA helicase 38 
 gma-u.5   100778091   DEAD-box ATP-dependent RNA helicase 38 
 vvi-u.5   100247027   DEAD-box ATP-dependent RNA helicase 38 
 vvi-u.5   100257270   DEAD-box ATP-dependent RNA helicase 38 
 vvi-u.5   100854880   DEAD-box ATP-dependent RNA helicase 38 
 ppo-u.5   18100101   DEAD-box ATP-dependent RNA helicase 38 
 mtr-u.5   25492156   DEAD-box ATP-dependent RNA helicase 38 
 mtr-u.5   11434133   DEAD-box ATP-dependent RNA helicase 38 
 sly-u.5   101252541   DEAD-box ATP-dependent RNA helicase 38 
 sly-u.5   101243705   DEAD-box ATP-dependent RNA helicase 38 
 sot-r.1   102600806   DEAD-box ATP-dependent RNA helicase 38 
 nta-r.1   107772250   DEAD-box ATP-dependent RNA helicase 38-like 
 nta-r.1   107782346   DEAD-box ATP-dependent RNA helicase 38-like 
 nta-r.1   107814119   DEAD-box ATP-dependent RNA helicase 38 
 osa-u.5   4331680   DEAD-box ATP-dependent RNA helicase 38-like 
 zma-u.5   100193503   DEAD-box ATP-dependent RNA helicase 38 
 tae-r.2   123084882   DEAD-box ATP-dependent RNA helicase 38 
 tae-r.2   123093207   DEAD-box ATP-dependent RNA helicase 38 
 tae-r.2   123098471   DEAD-box ATP-dependent RNA helicase 38 
 hvu-r.1   123449488   DEAD-box ATP-dependent RNA helicase 38 
 sbi-r.1   8085458   DEAD-box ATP-dependent RNA helicase 38 
 bdi-r.1   LOS4   DEAD-box ATP-dependent RNA helicase 38 
 cre-r.1   CHLRE_06g306850v5   uncharacterized protein 

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Top 50 coexpressed genes to LOS4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LOS4 (ath-m.9 coexpression data)

CoexMap"824477"


athLOS4 | Entrez gene ID : 824477      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 3 1 2 2 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03013 [list] [network] Nucleocytoplasmic transport (105 genes)
ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:0016973 [list] [network] poly(A)+ mRNA export from nucleus  (7 genes)  IDA  
GO:0009408 [list] [network] response to heat  (271 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IMP  
GO CC
GO:0005635 [list] [network] nuclear envelope  (107 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA RCA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (42 genes)  ISS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_190879.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  cysk 2,  cyto_nucl 2,  cyto_plas 2  (predict for NP_190879.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_190879.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
LOS4
ath-u.5
for
LOS4
ath-r.7
for
LOS4
ath-e.2
for
LOS4
ath-m.4.bio
for
LOS4
ath-m.4.hor
for
LOS4
ath-m.4.lig
for
LOS4
ath-m.4.str
for
LOS4
ath-m.4.tis
for
LOS4
bra-r.6
for
103850278
bra-r.6
for
103863439
bna-r.1
for
106452440
bna-r.1
for
106402035
bna-r.1
for
111203637
ghi-r.1
for
107899509
ghi-r.1
for
107931533
cit-r.1
for
102609367
gma-u.5
for
100784739
gma-u.5
for
100778091
vvi-u.5
for
100247027
vvi-u.5
for
100257270
vvi-u.5
for
100854880
ppo-u.5
for
18100101
mtr-u.5
for
25492156
mtr-u.5
for
11434133
sly-u.5
for
101252541
sly-u.5
for
101243705
sot-r.1
for
102600806
nta-r.1
for
107772250
nta-r.1
for
107782346
nta-r.1
for
107814119
osa-u.5
for
4331680
zma-u.5
for
100193503
tae-r.2
for
123084882
tae-r.2
for
123093207
tae-r.2
for
123098471
hvu-r.1
for
123449488
sbi-r.1
for
8085458
bdi-r.1
for
LOS4
cre-r.1
for
CHLRE_06g306850v5


Ortholog ID: 5128
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi vvi vvi ppo mtr mtr sly sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOS4 LOC103850278 LOC103863439 LOC106452440 LOC111203637 LOC106389130 LOC107899509 LOC107931533 LOC102609367 LOC100784739 LOC100778091 LOC100247027 LOC100257270 LOC100854880 LOC18100101 LOC25492156 LOC11434133 LOC101252541 LOC101243705 LOC102600806 LOC107772250 LOC107782346 LOC107825795 LOC4331680 LOC100193503 LOC123084882 LOC123098471 LOC123121195 LOC123449488 LOC8085458 LOS4 CHLRE_06g306850v5
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38-like DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38-like DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38-like DEAD-box ATP-dependent RNA helicase 38-like DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38-like DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03083 Polycomb repressive complex 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03015 mRNA surveillance pathway 2
bra03018 RNA degradation 2
bra00190 Oxidative phosphorylation 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
ghi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
ghi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
cit03015 mRNA surveillance pathway 3
cit04141 Protein processing in endoplasmic reticulum 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 7
gma03050 Proteasome 6
gma03008 Ribosome biogenesis in eukaryotes 5
gma03250 Viral life cycle - HIV-1 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03015 mRNA surveillance pathway 4
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03250 Viral life cycle - HIV-1 3
ppo01200 Carbon metabolism 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03040 Spliceosome 3
mtr03018 RNA degradation 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03018 RNA degradation 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly03013 Nucleocytoplasmic transport 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 5
sot00480 Glutathione metabolism 3
sot03010 Ribosome 3
sot03008 Ribosome biogenesis in eukaryotes 3
sot03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae01200 Carbon metabolism 3
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 8
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi03013 Nucleocytoplasmic transport 4
bdi03015 mRNA surveillance pathway 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824477 103850278 103863439 106452440 111203637 106389130 107899509 107931533 102609367 100784739 100778091 100247027 100257270 100854880 18100101 25492156 11434133 101252541 101243705 102600806 107772250 107782346 107825795 4331680 100193503 123084882 123098471 123121195 123449488 8085458 100841980 5716869
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