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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   FCA   flowering time control protein FCA 
 ath-u.5   FCA   flowering time control protein FCA 
 ath-r.7   FCA   flowering time control protein FCA 
 ath-e.2   FCA   flowering time control protein FCA 
 ath-m.4.bio   FCA   flowering time control protein FCA 
 ath-m.4.hor   FCA   flowering time control protein FCA 
 ath-m.4.lig   FCA   flowering time control protein FCA 
 ath-m.4.str   FCA   flowering time control protein FCA 
 ath-m.4.tis   FCA   flowering time control protein FCA 
 bra-r.6   FCA   flowering time control protein FCA 
 bna-r.1   106367467   flowering time control protein FCA 
 bna-r.1   125575626   flowering time control protein FCA-like 
 ghi-r.1   107916225   flowering time control protein FCA 
 ghi-r.1   107896590   flowering time control protein FCA 
 cit-r.1   102613412   flowering time control protein FCA 
 gma-u.5   100798390   flowering time control protein FCA 
 gma-u.5   100786792   flowering time control protein FCA 
 vvi-u.5   FCA   flowering time control 
 ppo-u.5   18102616   flowering time control protein FCA 
 mtr-u.5   11418334   flowering time control protein FCA 
 sly-u.5   101267262   flowering time control protein FCA 
 sot-r.1   102581555   flowering time control protein FCA 
 nta-r.1   107794627   flowering time control protein FCA 
 nta-r.1   107792724   flowering time control protein FCA 
 osa-u.5   4346429   flowering time control protein FCA 
 zma-u.5   100383162   RNA binding 
 tae-r.2   123111501   flowering time control protein FCA 
 tae-r.2   123120723   flowering time control protein FCA 
 tae-r.2   543096   flowering time control protein FCA 
 hvu-r.1   123399188   flowering time control protein FCA-like 
 sbi-r.1   110432370   flowering time control protein FCA 
 bdi-r.1   100836687   flowering time control protein FCA 

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Top 50 coexpressed genes to FCA (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FCA (ath-m.9 coexpression data)

CoexMap"827323"


athFCA | Entrez gene ID : 827323      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031048 [list] [network] regulatory ncRNA-mediated heterochromatin formation  (50 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IGI  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IGI  
GO CC
GO:0016604 [list] [network] nuclear body  (91 genes)  IDA  
GO:0000785 [list] [network] chromatin  (140 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0010427 [list] [network] abscisic acid binding  (19 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001319956.1 [sequence] [blastp]
NP_193363.4 [sequence] [blastp]
NP_680713.2 [sequence] [blastp]
NP_849542.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001319956.1)
nucl 9,  cyto_nucl 5  (predict for NP_193363.4)
nucl 10  (predict for NP_680713.2)
nucl 9  (predict for NP_849542.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001319956.1)
other 9  (predict for NP_193363.4)
other 7  (predict for NP_680713.2)
other 6,  mito 3  (predict for NP_849542.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
FCA
ath-u.5
for
FCA
ath-r.7
for
FCA
ath-e.2
for
FCA
ath-m.4.bio
for
FCA
ath-m.4.hor
for
FCA
ath-m.4.lig
for
FCA
ath-m.4.str
for
FCA
ath-m.4.tis
for
FCA
bra-r.6
for
FCA
bna-r.1
for
106367467
bna-r.1
for
125575626
ghi-r.1
for
107916225
ghi-r.1
for
107896590
cit-r.1
for
102613412
gma-u.5
for
100798390
gma-u.5
for
100786792
vvi-u.5
for
FCA
ppo-u.5
for
18102616
mtr-u.5
for
11418334
sly-u.5
for
101267262
sot-r.1
for
102581555
nta-r.1
for
107794627
nta-r.1
for
107792724
osa-u.5
for
4346429
zma-u.5
for
100383162
tae-r.2
for
123111501
tae-r.2
for
123120723
tae-r.2
for
543096
hvu-r.1
for
123399188
sbi-r.1
for
110432370
bdi-r.1
for
100836687


Ortholog ID: 10857
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol FCA FCA LOC106367467 LOC125575626 LOC107916225 LOC107896590 LOC102613412 LOC100798390 LOC100786792 FCA LOC18102616 LOC11418334 LOC101267262 LOC102581555 LOC107794627 LOC107792724 LOC4346429 LOC100383162 LOC123111501 LOC123120723 LOC543096 LOC123399188 LOC110432370 LOC100836687
Function* flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA-like flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA RNA binding flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA-like flowering time control protein FCA flowering time control protein FCA
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 4
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00860 Porphyrin metabolism 3
tae00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827323 103869778 106367467 125575626 107916225 107896590 102613412 100798390 100786792 100255122 18102616 11418334 101267262 102581555 107794627 107792724 4346429 100383162 123111501 123120723 543096 123399188 110432370 100836687
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