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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   UPL4   ubiquitin-protein ligase 4 
 ath-u.5   UPL4   ubiquitin-protein ligase 4 
 ath-r.7   UPL4   ubiquitin-protein ligase 4 
 ath-e.2   UPL4   ubiquitin-protein ligase 4 
 ath-m.4.bio   UPL4   ubiquitin-protein ligase 4 
 ath-m.4.hor   UPL4   ubiquitin-protein ligase 4 
 ath-m.4.lig   UPL4   ubiquitin-protein ligase 4 
 ath-m.4.str   UPL4   ubiquitin-protein ligase 4 
 ath-m.4.tis   UPL4   ubiquitin-protein ligase 4 
 gma-u.5   100798530   E3 ubiquitin-protein ligase UPL4 
 gma-u.5   100793534   E3 ubiquitin-protein ligase UPL4 
 vvi-u.5   100243094   E3 ubiquitin-protein ligase UPL4 
 ppo-u.5   18100234   E3 ubiquitin-protein ligase UPL4 
 ppo-u.5   7467604   E3 ubiquitin-protein ligase UPL4 
 mtr-u.5   25484050   E3 ubiquitin-protein ligase UPL4 
 sly-u.5   101257890   E3 ubiquitin-protein ligase UPL4 
 osa-u.5   4339037   E3 ubiquitin-protein ligase UPL4 
 zma-u.5   103635779   E3 ubiquitin-protein ligase UPL4 

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Top 50 coexpressed genes to UPL4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UPL4 (ath-m.9 coexpression data)

CoexMap"831758"


athUPL4 | Entrez gene ID : 831758      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)
GO BP
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  ISS  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (192 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  ISS  
Protein NP_001331961.1 [sequence] [blastp]
NP_195908.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 2,  E.R. 2,  cysk_nucl 2,  mito 1,  plas 1,  vacu 1,  mito_plas 1  (predict for NP_001331961.1)
nucl 3,  chlo 2,  E.R. 2,  cysk_nucl 2,  mito 1,  plas 1,  vacu 1,  mito_plas 1  (predict for NP_195908.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001331961.1)
other 6  (predict for NP_195908.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
UPL4
ath-u.5
for
UPL4
ath-r.7
for
UPL4
ath-e.2
for
UPL4
ath-m.4.bio
for
UPL4
ath-m.4.hor
for
UPL4
ath-m.4.lig
for
UPL4
ath-m.4.str
for
UPL4
ath-m.4.tis
for
UPL4
gma-u.5
for
100798530
gma-u.5
for
100793534
vvi-u.5
for
100243094
ppo-u.5
for
18100234
ppo-u.5
for
7467604
mtr-u.5
for
25484050
sly-u.5
for
101257890
osa-u.5
for
4339037
zma-u.5
for
103635779


Ortholog ID: 9107
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol UPL4 LOC103855501 LOC103850463 LOC106448641 LOC106401092 LOC107899676 LOC107948335 LOC102625174 LOC100798530 LOC100793534 LOC100243094 LOC18100234 LOC7467604 LOC25484050 LOC101257890 LOC102581024 LOC107821932 LOC107785213 LOC4339037 LOC103635779 LOC123136312 LOC123182296 LOC123445215 LOC8072557 LOC100831829
Function* ubiquitin-protein ligase 4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4 E3 ubiquitin-protein ligase UPL4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00540 Lipopolysaccharide biosynthesis 2
bna03008 Ribosome biogenesis in eukaryotes 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 6
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04146 Peroxisome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04146 Peroxisome 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 4
nta00592 alpha-Linolenic acid metabolism 4
nta03040 Spliceosome 2
nta00564 Glycerophospholipid metabolism 2
nta00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 5
nta00592 alpha-Linolenic acid metabolism 3
nta03040 Spliceosome 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 8
tae04141 Protein processing in endoplasmic reticulum 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831758 103855501 103850463 106448641 106401092 107899676 107948335 102625174 100798530 100793534 100243094 18100234 7467604 25484050 101257890 102581024 107821932 107785213 4339037 103635779 123136312 123182296 123445215 8072557 100831829
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