ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7497594	PHD finger protein ALFIN-LIKE 4
ppo-r.4	7497594	PHD finger protein ALFIN-LIKE 4
ppo-m.4	7497594	PHD finger protein ALFIN-LIKE 4
ppo-u.5	18109476	PHD finger protein Alfin1
ppo-u.5	7466074	PHD finger protein ALFIN-LIKE 1
ppo-u.5	7476667	PHD finger protein ALFIN-LIKE 4
gma-u.5	100170696	PHD finger protein
gma-u.5	PHD4	PHD finger superfamily protein
gma-u.5	100170698	PHD5
mtr-u.5	25500530	PHD finger protein ALFIN-LIKE 4
mtr-u.5	25481987	PHD finger protein ALFIN-LIKE 4
mtr-u.5	25491446	PHD finger protein ALFIN-LIKE 1
ath-u.5	AL4	alfin-like 4
ath-u.5	AL6	alfin-like 6
ath-u.5	AL2	alfin-like 2
bra-r.6	103842964	PHD finger protein ALFIN-LIKE 7
bra-r.6	103839442	PHD finger protein ALFIN-LIKE 6
vvi-u.5	100852794	PHD finger protein ALFIN-LIKE 4
vvi-u.5	100251933	PHD finger protein ALFIN-LIKE 1
vvi-u.5	100263503	PHD finger protein ALFIN-LIKE 4
ghi-r.1	107907038	PHD finger protein ALFIN-LIKE 4
ghi-r.1	107905795	PHD finger protein ALFIN-LIKE 7
ghi-r.1	107903455	PHD finger protein ALFIN-LIKE 1
bna-r.1	106439275	PHD finger protein ALFIN-LIKE 2-like
bna-r.1	106440363	PHD finger protein ALFIN-LIKE 4
cit-r.1	102628070	PHD finger protein ALFIN-LIKE 2-like
cit-r.1	102612029	PHD finger protein ALFIN-LIKE 7
cit-r.1	102609956	PHD finger protein ALFIN-LIKE 4
sly-u.5	101259267	PHD finger protein ALFIN-LIKE 4
sly-u.5	101251316	PHD finger protein ALFIN-LIKE 1
sly-u.5	101250743	alfin1-like PHD domain-containing protein
sot-r.1	102592642	PHD finger protein ALFIN-LIKE 4-like
sot-r.1	102600287	PHD finger protein ALFIN-LIKE 4-like
sot-r.1	102580223	PHD finger protein ALFIN-LIKE 1-like
nta-r.1	107787196	PHD finger protein ALFIN-LIKE 1-like
nta-r.1	107792882	PHD finger protein Alfin1-like
nta-r.1	107790155	PHD finger protein ALFIN-LIKE 1-like
osa-u.5	4343868	PHD finger protein ALFIN-LIKE 9-like
osa-u.5	9269003	PHD finger protein ALFIN-LIKE 7-like
osa-u.5	4342784	PHD finger protein ALFIN-LIKE 2-like
zma-u.5	100193399	ALFIN-like transcription factor
zma-u.5	100283532	uncharacterized LOC100283532
zma-u.5	100273857	uncharacterized LOC100273857
tae-r.2	123039588	PHD finger protein ALFIN-LIKE 1
tae-r.2	123113963	PHD finger protein ALFIN-LIKE 3
tae-r.2	123133607	PHD finger protein ALFIN-LIKE 5
hvu-r.1	123453008	PHD finger protein ALFIN-LIKE 3-like
hvu-r.1	123442808	PHD finger protein ALFIN-LIKE 5
hvu-r.1	123426411	PHD finger protein ALFIN-LIKE 1
sbi-r.1	8057052	PHD finger protein ALFIN-LIKE 3
sbi-r.1	8075860	PHD finger protein ALFIN-LIKE 7
sbi-r.1	8072592	PHD finger protein ALFIN-LIKE 7
bdi-r.1	100822143	PHD finger protein ALFIN-LIKE 7
bdi-r.1	100822053	PHD finger protein ALFIN-LIKE 2
bdi-r.1	100830499	PHD finger protein ALFIN-LIKE 6
cre-r.1	CHLRE_07g320950v5	uncharacterized protein
cre-r.1	CHLRE_10g441050v5	uncharacterized protein
cre-r.1	CHLRE_07g357650v5	uncharacterized protein

Top 50 coexpressed genes to 7497594 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7497594 (ppo-u.5 coexpression data)

CoexMap"7497594"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1948 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(71 genes)	IEA
GO:0003712 [list] [network] transcription coregulator activity	(154 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(442 genes)	IEA

Protein

XP_024458424.1 [sequence] [blastp]
XP_052309552.1 [sequence] [blastp]
XP_052309553.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 4, cyto 1	(predict for XP_024458424.1)
chlo 5, mito 4, cyto 1	(predict for XP_052309552.1)
chlo 4, mito 4, chlo_mito 4	(predict for XP_052309553.1)

Subcellular
localization
TargetP

other 8	(predict for XP_024458424.1)
other 8	(predict for XP_052309552.1)
other 8	(predict for XP_052309553.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7497594	ppo-r.4 for 7497594	ppo-m.4 for 7497594	ppo-u.5 for 18109476	ppo-u.5 for 7466074	ppo-u.5 for 7476667	gma-u.5 for 100170696	gma-u.5 for PHD4	gma-u.5 for 100170698	mtr-u.5 for 25500530	mtr-u.5 for 25481987	mtr-u.5 for 25491446	ath-u.5 for AL4	ath-u.5 for AL6	ath-u.5 for AL2	bra-r.6 for 103842964	bra-r.6 for 103839442	vvi-u.5 for 100852794	vvi-u.5 for 100251933	vvi-u.5 for 100263503	ghi-r.1 for 107907038	ghi-r.1 for 107905795	ghi-r.1 for 107903455	bna-r.1 for 106439275	bna-r.1 for 106440363	cit-r.1 for 102628070	cit-r.1 for 102612029	cit-r.1 for 102609956	sly-u.5 for 101259267	sly-u.5 for 101251316	sly-u.5 for 101250743	sot-r.1 for 102592642	sot-r.1 for 102600287	sot-r.1 for 102580223	nta-r.1 for 107787196	nta-r.1 for 107792882	nta-r.1 for 107790155	osa-u.5 for 4343868	osa-u.5 for 9269003	osa-u.5 for 4342784	zma-u.5 for 100193399	zma-u.5 for 100283532	zma-u.5 for 100273857	tae-r.2 for 123039588	tae-r.2 for 123113963	tae-r.2 for 123133607	hvu-r.1 for 123453008	hvu-r.1 for 123442808	hvu-r.1 for 123426411	sbi-r.1 for 8057052	sbi-r.1 for 8075860	sbi-r.1 for 8072592	bdi-r.1 for 100822143	bdi-r.1 for 100822053	bdi-r.1 for 100830499	cre-r.1 for CHLRE_07g320950v5	cre-r.1 for CHLRE_10g441050v5	cre-r.1 for CHLRE_07g357650v5

Ortholog

Ortholog ID: 163

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

AL2

AL3

AL7

FIN1

Function^*

PHD finger protein Alfin1

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 1-like

PHD finger protein ALFIN-LIKE 5-like

PHD finger protein ALFIN-LIKE 4

PHD finger protein Alfin1

alfin-like 2

alfin-like 3

alfin-like 7

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 3

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 7

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 7

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 4

PHD finger protein ALFIN-LIKE 2

putative alfin-like transcription factor

PHD finger protein ALFIN-LIKE 1-like

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 5-like

PHD finger protein ALFIN-LIKE 5

PHD finger protein ALFIN-LIKE 7-like

PHD finger protein ALFIN-LIKE 2-like

PHD finger protein ALFIN-LIKE 6-like

uncharacterized LOC100283422

ALFIN-like transcription factor

uncharacterized LOC100192074

PHD finger protein ALFIN-LIKE 9

PHD finger protein ALFIN-LIKE 8

PHD finger protein ALFIN-LIKE 3

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 9-like

PHD finger protein ALFIN-LIKE 8

PHD finger protein ALFIN-LIKE 1

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 8

PHD finger protein ALFIN-LIKE 2

PHD finger protein ALFIN-LIKE 6

PHD finger protein ALFIN-LIKE 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	6
gma00020	Citrate cycle (TCA cycle)	3
gma01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03040	Spliceosome	3
gma04382	Cornified envelope formation	2
gma03050	Proteasome	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath04141	Protein processing in endoplasmic reticulum	3
ath03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00230	Purine metabolism	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01230	Biosynthesis of amino acids	3
sot00670	One carbon pool by folate	3
sot00260	Glycine, serine and threonine metabolism	2
sot00460	Cyanoamino acid metabolism	2
sot00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04070	Phosphatidylinositol signaling system	4
sot04075	Plant hormone signal transduction	4
sot04626	Plant-pathogen interaction	4
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00051	Fructose and mannose metabolism	3
tae00052	Galactose metabolism	3
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3
tae03272	Virion - Hepatitis viruses	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	3
sbi04141	Protein processing in endoplasmic reticulum	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi03020	RNA polymerase	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	10
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03015	mRNA surveillance pathway	3
cre04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03015	mRNA surveillance pathway	2
cre03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

18109476

7466074

7490325

100793126

100794662

25500530

25481987

25494361

820290

823316

838013

103827517

103848022

100852794

100251933

100263503

107905795

107887134

107910658

106452544

106365444

106348570

102612029

102609956

102609983

101259267

101248299

101264911

102599199

102577447

102605058

107795748

107827993

107800878

9269003

4342784

4324896

100283422

100216893

100192074

123187982

123091217

123123460

123426080

123425355

123447832

8071208

110433568

8058123

100822053

100830499

100829192

5726584

5716151

5729202

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	3	2	3	3	2	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7497594 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7497594 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**